Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and visC are separated by 447 nucleotides visC and ubiH are separated by 22 nucleotides
b2905: gcvT - glycine cleavage system aminomethyltransferase T (NCBI), at 3,047,595 to 3,048,689
gcvT
b2906: visC - hypothetical protein (NCBI), at 3,049,137 to 3,050,339
visC
b2907: ubiH - 2-octaprenyl-6-methoxyphenyl hydroxylase (NCBI), at 3,050,362 to 3,051,540
ubiH
Position (kb)
3049
3050
3051 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3048.181 kb on - strand, within gcvT at 3048.181 kb on - strand, within gcvT at 3048.196 kb on - strand, within gcvT at 3048.196 kb on - strand, within gcvT at 3048.231 kb on - strand, within gcvT at 3048.231 kb on - strand, within gcvT at 3048.264 kb on - strand, within gcvT at 3048.306 kb on + strand, within gcvT at 3048.324 kb on - strand, within gcvT at 3048.339 kb on + strand, within gcvT at 3048.339 kb on + strand, within gcvT at 3048.399 kb on + strand, within gcvT at 3048.569 kb on + strand, within gcvT at 3048.569 kb on + strand, within gcvT at 3048.608 kb on - strand at 3048.624 kb on - strand at 3048.683 kb on + strand at 3048.683 kb on + strand at 3048.756 kb on + strand at 3048.756 kb on + strand at 3048.859 kb on - strand at 3048.859 kb on - strand at 3048.928 kb on - strand at 3049.195 kb on - strand at 3049.205 kb on - strand at 3049.205 kb on - strand at 3049.208 kb on - strand at 3049.208 kb on - strand at 3049.213 kb on - strand at 3049.310 kb on - strand, within visC at 3049.310 kb on - strand, within visC at 3049.315 kb on - strand, within visC at 3049.365 kb on + strand, within visC at 3049.406 kb on + strand, within visC at 3049.458 kb on + strand, within visC at 3049.474 kb on - strand, within visC at 3049.536 kb on + strand, within visC at 3049.544 kb on - strand, within visC at 3049.544 kb on - strand, within visC at 3049.546 kb on - strand, within visC at 3049.546 kb on - strand, within visC at 3049.546 kb on - strand, within visC at 3049.549 kb on + strand, within visC at 3049.563 kb on - strand, within visC at 3049.632 kb on + strand, within visC at 3049.947 kb on + strand, within visC at 3049.947 kb on + strand, within visC at 3049.999 kb on - strand, within visC at 3049.999 kb on - strand, within visC at 3050.041 kb on + strand, within visC at 3050.041 kb on + strand, within visC at 3050.041 kb on - strand, within visC at 3050.093 kb on + strand, within visC at 3050.093 kb on + strand, within visC at 3050.093 kb on + strand, within visC at 3050.093 kb on - strand, within visC at 3050.184 kb on + strand, within visC at 3050.241 kb on + strand at 3050.241 kb on + strand at 3050.370 kb on + strand at 3050.370 kb on + strand at 3050.376 kb on + strand at 3050.376 kb on + strand at 3050.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 3,048,181 - gcvT b2905 0.54 +0.0 3,048,181 - gcvT b2905 0.54 +0.4 3,048,196 - gcvT b2905 0.55 -0.5 3,048,196 - gcvT b2905 0.55 +0.4 3,048,231 - gcvT b2905 0.58 -0.7 3,048,231 - gcvT b2905 0.58 -0.0 3,048,264 - gcvT b2905 0.61 -0.9 3,048,306 + gcvT b2905 0.65 -0.3 3,048,324 - gcvT b2905 0.67 -0.7 3,048,339 + gcvT b2905 0.68 -0.3 3,048,339 + gcvT b2905 0.68 -0.6 3,048,399 + gcvT b2905 0.73 -0.7 3,048,569 + gcvT b2905 0.89 -0.3 3,048,569 + gcvT b2905 0.89 -0.1 3,048,608 - +0.4 3,048,624 - +0.5 3,048,683 + -0.1 3,048,683 + -0.4 3,048,756 + -0.0 3,048,756 + +0.2 3,048,859 - +0.3 3,048,859 - -0.6 3,048,928 - +1.2 3,049,195 - -0.7 3,049,205 - +0.2 3,049,205 - -0.4 3,049,208 - -0.3 3,049,208 - -0.1 3,049,213 - +0.3 3,049,310 - visC b2906 0.14 -1.3 3,049,310 - visC b2906 0.14 -1.0 3,049,315 - visC b2906 0.15 +0.4 3,049,365 + visC b2906 0.19 +2.0 3,049,406 + visC b2906 0.22 -0.6 3,049,458 + visC b2906 0.27 +0.6 3,049,474 - visC b2906 0.28 -0.1 3,049,536 + visC b2906 0.33 +0.2 3,049,544 - visC b2906 0.34 -1.5 3,049,544 - visC b2906 0.34 +0.1 3,049,546 - visC b2906 0.34 +1.5 3,049,546 - visC b2906 0.34 -2.7 3,049,546 - visC b2906 0.34 +0.6 3,049,549 + visC b2906 0.34 -0.9 3,049,563 - visC b2906 0.35 +0.1 3,049,632 + visC b2906 0.41 -0.1 3,049,947 + visC b2906 0.67 +0.5 3,049,947 + visC b2906 0.67 -1.0 3,049,999 - visC b2906 0.72 -1.4 3,049,999 - visC b2906 0.72 -1.0 3,050,041 + visC b2906 0.75 -2.0 3,050,041 + visC b2906 0.75 -1.0 3,050,041 - visC b2906 0.75 +0.3 3,050,093 + visC b2906 0.79 -0.7 3,050,093 + visC b2906 0.79 -1.5 3,050,093 + visC b2906 0.79 -0.1 3,050,093 - visC b2906 0.79 -0.7 3,050,184 + visC b2906 0.87 -0.8 3,050,241 + +1.0 3,050,241 + -1.0 3,050,370 + -0.0 3,050,370 + -0.2 3,050,376 + +0.2 3,050,376 + -1.4 3,050,399 - -0.1
Or see this region's nucleotide sequence