Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfdK and yfdL are separated by 26 nucleotides yfdL and yfdM overlap by 5 nucleotides yfdM and yfdN overlap by 1 nucleotides yfdN and oweS overlap by 4 nucleotides
b2354: yfdK - CPS-53 (KpLE1) prophage; conserved protein (NCBI), at 2,469,099 to 2,469,539
yfdK
b2355: yfdL - CPS-53 (KpLE1) prophage; conserved protein (RefSeq), at 2,469,566 to 2,470,144
yfdL
b2356: yfdM - orf, hypothetical protein (VIMSS), at 2,470,140 to 2,470,409
yfdM
b2357: yfdN - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,470,409 to 2,470,903
yfdN
b2358: oweS - CPS-53 (KpLE1) prophage; predicted defective phage replication protein O (RefSeq), at 2,470,900 to 2,471,607
oweS
Position (kb)
2470
2471 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.164 kb on + strand, within yfdK at 2469.170 kb on - strand, within yfdK at 2469.170 kb on - strand, within yfdK at 2469.172 kb on - strand, within yfdK at 2469.179 kb on + strand, within yfdK at 2469.210 kb on + strand, within yfdK at 2469.210 kb on + strand, within yfdK at 2469.236 kb on - strand, within yfdK at 2469.241 kb on - strand, within yfdK at 2469.331 kb on - strand, within yfdK at 2469.331 kb on - strand, within yfdK at 2469.331 kb on - strand, within yfdK at 2469.332 kb on - strand, within yfdK at 2469.332 kb on - strand, within yfdK at 2469.332 kb on - strand, within yfdK at 2469.332 kb on - strand, within yfdK at 2469.354 kb on - strand, within yfdK at 2469.442 kb on - strand, within yfdK at 2469.442 kb on - strand, within yfdK at 2469.451 kb on - strand, within yfdK at 2469.457 kb on + strand, within yfdK at 2469.457 kb on + strand, within yfdK at 2469.459 kb on + strand, within yfdK at 2469.460 kb on - strand, within yfdK at 2469.461 kb on - strand, within yfdK at 2469.461 kb on - strand, within yfdK at 2469.463 kb on + strand, within yfdK at 2469.596 kb on + strand at 2469.596 kb on + strand at 2469.610 kb on - strand at 2469.626 kb on - strand, within yfdL at 2469.659 kb on - strand, within yfdL at 2469.663 kb on - strand, within yfdL at 2469.663 kb on - strand, within yfdL at 2469.685 kb on + strand, within yfdL at 2469.688 kb on - strand, within yfdL at 2469.695 kb on - strand, within yfdL at 2469.751 kb on - strand, within yfdL at 2469.754 kb on - strand, within yfdL at 2469.758 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.763 kb on - strand, within yfdL at 2469.772 kb on + strand, within yfdL at 2469.801 kb on - strand, within yfdL at 2469.852 kb on - strand, within yfdL at 2469.852 kb on - strand, within yfdL at 2469.857 kb on + strand, within yfdL at 2469.865 kb on + strand, within yfdL at 2469.867 kb on - strand, within yfdL at 2469.890 kb on - strand, within yfdL at 2469.940 kb on - strand, within yfdL at 2469.942 kb on - strand, within yfdL at 2469.942 kb on - strand, within yfdL at 2469.998 kb on + strand, within yfdL at 2470.038 kb on - strand, within yfdL at 2470.038 kb on - strand, within yfdL at 2470.049 kb on - strand, within yfdL at 2470.049 kb on - strand, within yfdL at 2470.090 kb on - strand at 2470.168 kb on + strand, within yfdM at 2470.211 kb on - strand, within yfdM at 2470.448 kb on + strand at 2470.448 kb on + strand at 2470.477 kb on + strand, within yfdN at 2470.477 kb on + strand, within yfdN at 2470.484 kb on - strand, within yfdN at 2470.484 kb on - strand, within yfdN at 2470.741 kb on - strand, within yfdN at 2470.913 kb on - strand at 2470.928 kb on + strand at 2471.021 kb on - strand, within oweS at 2471.021 kb on - strand, within oweS at 2471.090 kb on + strand, within oweS at 2471.133 kb on + strand, within oweS at 2471.133 kb on + strand, within oweS at 2471.201 kb on + strand, within oweS at 2471.201 kb on + strand, within oweS at 2471.263 kb on + strand, within oweS at 2471.277 kb on - strand, within oweS at 2471.277 kb on - strand, within oweS at 2471.372 kb on + strand, within oweS at 2471.372 kb on + strand, within oweS
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 2,469,164 + yfdK b2354 0.15 -0.6 2,469,164 + yfdK b2354 0.15 -0.4 2,469,164 + yfdK b2354 0.15 -0.6 2,469,164 + yfdK b2354 0.15 +1.0 2,469,164 + yfdK b2354 0.15 -0.6 2,469,164 + yfdK b2354 0.15 +0.3 2,469,164 + yfdK b2354 0.15 +0.4 2,469,164 + yfdK b2354 0.15 +1.0 2,469,170 - yfdK b2354 0.16 -0.2 2,469,170 - yfdK b2354 0.16 -0.4 2,469,172 - yfdK b2354 0.17 -0.1 2,469,179 + yfdK b2354 0.18 -0.0 2,469,210 + yfdK b2354 0.25 -0.0 2,469,210 + yfdK b2354 0.25 -0.0 2,469,236 - yfdK b2354 0.31 +0.2 2,469,241 - yfdK b2354 0.32 +0.1 2,469,331 - yfdK b2354 0.53 +0.2 2,469,331 - yfdK b2354 0.53 +1.0 2,469,331 - yfdK b2354 0.53 -0.0 2,469,332 - yfdK b2354 0.53 -0.5 2,469,332 - yfdK b2354 0.53 -0.0 2,469,332 - yfdK b2354 0.53 -0.8 2,469,332 - yfdK b2354 0.53 -1.0 2,469,354 - yfdK b2354 0.58 +0.6 2,469,442 - yfdK b2354 0.78 -1.9 2,469,442 - yfdK b2354 0.78 -2.6 2,469,451 - yfdK b2354 0.80 -0.0 2,469,457 + yfdK b2354 0.81 +2.3 2,469,457 + yfdK b2354 0.81 +1.0 2,469,459 + yfdK b2354 0.82 +1.0 2,469,460 - yfdK b2354 0.82 +0.1 2,469,461 - yfdK b2354 0.82 -0.4 2,469,461 - yfdK b2354 0.82 +0.2 2,469,463 + yfdK b2354 0.83 +1.0 2,469,596 + +1.0 2,469,596 + +1.0 2,469,610 - -0.0 2,469,626 - yfdL b2355 0.10 +0.8 2,469,659 - yfdL b2355 0.16 -0.7 2,469,663 - yfdL b2355 0.17 +0.4 2,469,663 - yfdL b2355 0.17 -0.4 2,469,685 + yfdL b2355 0.21 -0.0 2,469,688 - yfdL b2355 0.21 +0.9 2,469,695 - yfdL b2355 0.22 -1.3 2,469,751 - yfdL b2355 0.32 -0.1 2,469,754 - yfdL b2355 0.32 -0.8 2,469,758 - yfdL b2355 0.33 +0.7 2,469,763 - yfdL b2355 0.34 -1.8 2,469,763 - yfdL b2355 0.34 -0.7 2,469,763 - yfdL b2355 0.34 +0.1 2,469,763 - yfdL b2355 0.34 +0.1 2,469,763 - yfdL b2355 0.34 +0.5 2,469,763 - yfdL b2355 0.34 +0.1 2,469,772 + yfdL b2355 0.36 +1.0 2,469,801 - yfdL b2355 0.41 +1.3 2,469,852 - yfdL b2355 0.49 +0.1 2,469,852 - yfdL b2355 0.49 +0.9 2,469,857 + yfdL b2355 0.50 +1.0 2,469,865 + yfdL b2355 0.52 +1.0 2,469,867 - yfdL b2355 0.52 -0.2 2,469,890 - yfdL b2355 0.56 -0.3 2,469,940 - yfdL b2355 0.65 -0.1 2,469,942 - yfdL b2355 0.65 +0.0 2,469,942 - yfdL b2355 0.65 -0.4 2,469,998 + yfdL b2355 0.75 -0.7 2,470,038 - yfdL b2355 0.82 -1.8 2,470,038 - yfdL b2355 0.82 -0.5 2,470,049 - yfdL b2355 0.83 -0.1 2,470,049 - yfdL b2355 0.83 +0.4 2,470,090 - +0.1 2,470,168 + yfdM b2356 0.10 -0.6 2,470,211 - yfdM b2356 0.26 -0.5 2,470,448 + -0.6 2,470,448 + -0.0 2,470,477 + yfdN b2357 0.14 -0.6 2,470,477 + yfdN b2357 0.14 -1.0 2,470,484 - yfdN b2357 0.15 -0.4 2,470,484 - yfdN b2357 0.15 +0.5 2,470,741 - yfdN b2357 0.67 -0.2 2,470,913 - +0.0 2,470,928 + -0.8 2,471,021 - oweS b2358 0.17 -0.4 2,471,021 - oweS b2358 0.17 +0.0 2,471,090 + oweS b2358 0.27 +0.0 2,471,133 + oweS b2358 0.33 -0.0 2,471,133 + oweS b2358 0.33 +1.3 2,471,201 + oweS b2358 0.43 +0.4 2,471,201 + oweS b2358 0.43 -1.0 2,471,263 + oweS b2358 0.51 -0.1 2,471,277 - oweS b2358 0.53 -0.6 2,471,277 - oweS b2358 0.53 -0.3 2,471,372 + oweS b2358 0.67 +0.1 2,471,372 + oweS b2358 0.67 +1.1
Or see this region's nucleotide sequence