Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynaK and ydaY overlap by 11 nucleotides ydaY and ynaA are separated by 371 nucleotides ynaA and lomR are separated by 2 nucleotides lomR and insH-5 are separated by 147 nucleotides
b1365: ynaK - Rac prophage; conserved protein (NCBI), at 1,423,401 to 1,423,664
ynaK
b1366: ydaY - Rac prophage; predicted protein (RefSeq), at 1,423,654 to 1,424,106
ydaY
b1368: ynaA - Rac prophage; predicted tail protein (RefSeq), at 1,424,478 to 1,425,410
ynaA
b4570: lomR - no description, at 1,425,413 to 1,425,622
lomR
b1370: insH-5 - Rac prophage; IS5 transposase and trans-activator (NCBI), at 1,425,770 to 1,426,750
insH-5
Position (kb)
1424
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1423.480 kb on - strand, within ynaK at 1423.480 kb on - strand, within ynaK at 1423.480 kb on - strand, within ynaK at 1423.480 kb on - strand, within ynaK at 1423.480 kb on - strand, within ynaK at 1423.480 kb on - strand, within ynaK at 1423.482 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.485 kb on - strand, within ynaK at 1423.490 kb on - strand, within ynaK at 1423.507 kb on + strand, within ynaK at 1423.507 kb on - strand, within ynaK at 1423.539 kb on - strand, within ynaK at 1423.577 kb on - strand, within ynaK at 1423.584 kb on - strand, within ynaK at 1423.632 kb on - strand, within ynaK at 1423.632 kb on - strand, within ynaK at 1423.661 kb on + strand at 1423.664 kb on - strand at 1423.902 kb on + strand, within ydaY at 1423.902 kb on + strand, within ydaY at 1423.902 kb on + strand, within ydaY at 1423.937 kb on + strand, within ydaY at 1423.957 kb on + strand, within ydaY at 1423.962 kb on + strand, within ydaY at 1423.962 kb on + strand, within ydaY at 1423.962 kb on + strand, within ydaY at 1424.115 kb on + strand at 1424.126 kb on + strand at 1424.126 kb on + strand at 1424.159 kb on + strand at 1424.197 kb on + strand at 1424.234 kb on + strand at 1424.262 kb on + strand at 1424.288 kb on + strand at 1424.288 kb on + strand at 1424.318 kb on + strand at 1424.318 kb on + strand at 1424.319 kb on + strand at 1424.329 kb on + strand at 1424.329 kb on + strand at 1424.339 kb on + strand at 1424.341 kb on + strand at 1424.506 kb on - strand at 1424.506 kb on - strand at 1424.514 kb on - strand at 1424.628 kb on + strand, within ynaA at 1424.677 kb on + strand, within ynaA at 1424.862 kb on - strand, within ynaA at 1424.862 kb on - strand, within ynaA at 1424.869 kb on - strand, within ynaA at 1425.045 kb on + strand, within ynaA at 1425.045 kb on + strand, within ynaA at 1425.060 kb on + strand, within ynaA at 1425.178 kb on + strand, within ynaA at 1425.321 kb on - strand at 1425.377 kb on - strand at 1425.377 kb on - strand at 1425.496 kb on + strand, within lomR at 1425.548 kb on + strand, within lomR at 1425.574 kb on - strand, within lomR at 1426.405 kb on + strand, within insH-5
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 1,423,480 - ynaK b1365 0.30 +0.9 1,423,480 - ynaK b1365 0.30 +1.5 1,423,480 - ynaK b1365 0.30 -1.7 1,423,480 - ynaK b1365 0.30 +0.4 1,423,480 - ynaK b1365 0.30 -0.1 1,423,480 - ynaK b1365 0.30 +0.5 1,423,482 - ynaK b1365 0.31 -0.1 1,423,485 - ynaK b1365 0.32 +1.3 1,423,485 - ynaK b1365 0.32 +0.6 1,423,485 - ynaK b1365 0.32 +0.5 1,423,485 - ynaK b1365 0.32 +1.0 1,423,485 - ynaK b1365 0.32 +0.3 1,423,485 - ynaK b1365 0.32 -0.1 1,423,485 - ynaK b1365 0.32 -0.1 1,423,485 - ynaK b1365 0.32 -0.2 1,423,485 - ynaK b1365 0.32 +1.8 1,423,485 - ynaK b1365 0.32 +0.1 1,423,485 - ynaK b1365 0.32 -0.3 1,423,485 - ynaK b1365 0.32 +0.8 1,423,485 - ynaK b1365 0.32 +0.5 1,423,485 - ynaK b1365 0.32 -0.2 1,423,485 - ynaK b1365 0.32 -0.3 1,423,485 - ynaK b1365 0.32 -0.2 1,423,490 - ynaK b1365 0.34 -0.4 1,423,507 + ynaK b1365 0.40 -0.1 1,423,507 - ynaK b1365 0.40 +0.3 1,423,539 - ynaK b1365 0.52 -0.3 1,423,577 - ynaK b1365 0.67 +0.1 1,423,584 - ynaK b1365 0.69 +0.4 1,423,632 - ynaK b1365 0.88 +0.2 1,423,632 - ynaK b1365 0.88 -1.2 1,423,661 + -0.2 1,423,664 - -0.7 1,423,902 + ydaY b1366 0.55 -1.2 1,423,902 + ydaY b1366 0.55 -0.1 1,423,902 + ydaY b1366 0.55 +0.7 1,423,937 + ydaY b1366 0.62 -0.3 1,423,957 + ydaY b1366 0.67 -0.9 1,423,962 + ydaY b1366 0.68 -0.3 1,423,962 + ydaY b1366 0.68 -0.7 1,423,962 + ydaY b1366 0.68 -0.7 1,424,115 + -0.2 1,424,126 + +0.9 1,424,126 + +0.4 1,424,159 + +0.0 1,424,197 + +0.3 1,424,234 + -0.8 1,424,262 + -0.4 1,424,288 + +0.5 1,424,288 + -0.4 1,424,318 + +0.3 1,424,318 + -0.4 1,424,319 + +1.5 1,424,329 + +0.9 1,424,329 + -0.5 1,424,339 + -0.1 1,424,341 + -0.7 1,424,506 - -0.7 1,424,506 - +0.9 1,424,514 - -0.1 1,424,628 + ynaA b1368 0.16 -0.1 1,424,677 + ynaA b1368 0.21 +0.9 1,424,862 - ynaA b1368 0.41 +1.3 1,424,862 - ynaA b1368 0.41 -0.7 1,424,869 - ynaA b1368 0.42 -2.1 1,425,045 + ynaA b1368 0.61 -0.7 1,425,045 + ynaA b1368 0.61 +0.9 1,425,060 + ynaA b1368 0.62 -0.1 1,425,178 + ynaA b1368 0.75 -0.9 1,425,321 - +0.5 1,425,377 - -0.7 1,425,377 - -1.1 1,425,496 + lomR b4570 0.40 +0.1 1,425,548 + lomR b4570 0.64 -2.1 1,425,574 - lomR b4570 0.77 -0.1 1,426,405 + insH-5 b1370 0.65 +0.5
Or see this region's nucleotide sequence