Experiment: Control_TnG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt elbA and ycgX are separated by 699 nucleotides ycgX and ycgE are separated by 220 nucleotides
b1160: elbA - hypothetical protein (NCBI), at 1,210,903 to 1,211,226
elbA
b1161: ycgX - hypothetical protein (NCBI), at 1,211,926 to 1,212,330
ycgX
b1162: ycgE - predicted DNA-binding transcriptional regulator (NCBI), at 1,212,551 to 1,213,282
ycgE
Position (kb)
1211
1212
1213 Strain fitness (log2 ratio)
-1
0
1
2 at 1210.982 kb on - strand, within elbA at 1210.987 kb on - strand, within elbA at 1212.255 kb on - strand, within ycgX at 1212.292 kb on - strand at 1212.292 kb on - strand at 1212.327 kb on - strand at 1212.328 kb on - strand at 1212.345 kb on - strand at 1212.371 kb on - strand at 1212.371 kb on - strand at 1212.376 kb on - strand at 1212.376 kb on - strand at 1212.425 kb on - strand at 1212.427 kb on + strand at 1212.435 kb on - strand at 1212.435 kb on - strand at 1212.472 kb on + strand at 1212.477 kb on + strand at 1212.477 kb on + strand at 1212.483 kb on + strand at 1212.483 kb on + strand at 1212.579 kb on - strand at 1212.579 kb on - strand at 1212.596 kb on - strand at 1212.618 kb on + strand at 1212.689 kb on - strand, within ycgE at 1212.689 kb on - strand, within ycgE at 1212.803 kb on + strand, within ycgE at 1212.864 kb on - strand, within ycgE at 1212.892 kb on - strand, within ycgE at 1212.894 kb on + strand, within ycgE at 1212.951 kb on - strand, within ycgE at 1212.954 kb on + strand, within ycgE at 1212.993 kb on + strand, within ycgE at 1213.017 kb on - strand, within ycgE at 1213.051 kb on - strand, within ycgE at 1213.051 kb on - strand, within ycgE at 1213.160 kb on - strand, within ycgE at 1213.171 kb on + strand, within ycgE at 1213.247 kb on + strand at 1213.265 kb on - strand at 1213.265 kb on - strand at 1213.277 kb on - strand at 1213.301 kb on + strand at 1213.314 kb on + strand at 1213.314 kb on + strand at 1213.314 kb on + strand at 1213.314 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnG remove 1,210,982 - elbA b1160 0.24 -0.1 1,210,987 - elbA b1160 0.26 -0.1 1,212,255 - ycgX b1161 0.81 -0.8 1,212,292 - +0.5 1,212,292 - +0.1 1,212,327 - +0.1 1,212,328 - +0.3 1,212,345 - +1.7 1,212,371 - +0.7 1,212,371 - +0.2 1,212,376 - +0.7 1,212,376 - -0.1 1,212,425 - +0.7 1,212,427 + -0.4 1,212,435 - +0.0 1,212,435 - +0.3 1,212,472 + +0.9 1,212,477 + +0.6 1,212,477 + +2.5 1,212,483 + +0.0 1,212,483 + +0.3 1,212,579 - -0.1 1,212,579 - -1.2 1,212,596 - -0.9 1,212,618 + +1.9 1,212,689 - ycgE b1162 0.19 -0.8 1,212,689 - ycgE b1162 0.19 -0.1 1,212,803 + ycgE b1162 0.34 -0.4 1,212,864 - ycgE b1162 0.43 -0.3 1,212,892 - ycgE b1162 0.47 +1.8 1,212,894 + ycgE b1162 0.47 +1.4 1,212,951 - ycgE b1162 0.55 +0.4 1,212,954 + ycgE b1162 0.55 +0.1 1,212,993 + ycgE b1162 0.60 +0.9 1,213,017 - ycgE b1162 0.64 -0.5 1,213,051 - ycgE b1162 0.68 -0.0 1,213,051 - ycgE b1162 0.68 +0.2 1,213,160 - ycgE b1162 0.83 +0.3 1,213,171 + ycgE b1162 0.85 -0.9 1,213,247 + -0.1 1,213,265 - +0.9 1,213,265 - +0.9 1,213,277 - +0.9 1,213,301 + +0.1 1,213,314 + +0.0 1,213,314 + +0.5 1,213,314 + +0.2 1,213,314 + +1.4
Or see this region's nucleotide sequence