Strain Fitness in Escherichia coli BW25113 around b0997

Experiment: Control_TnG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorC and torA overlap by 1 nucleotidestorA and torD overlap by 4 nucleotidestorD and cbpM are separated by 151 nucleotides b0996: torC - trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit (NCBI), at 1,057,307 to 1,058,479 torC b0997: torA - trimethylamine N-oxide (TMAO) reductase I, catalytic subunit (NCBI), at 1,058,479 to 1,061,025 torA b0998: torD - chaperone protein TorD (NCBI), at 1,061,022 to 1,061,621 torD b0999: cbpM - modulator of CbpA co-chaperone (NCBI), at 1,061,773 to 1,062,078 cbpM Position (kb) 1058 1059 1060 1061 1062Strain fitness (log2 ratio) -1 0 1at 1057.487 kb on + strand, within torCat 1057.487 kb on + strand, within torCat 1057.562 kb on + strand, within torCat 1057.562 kb on + strand, within torCat 1057.765 kb on + strand, within torCat 1057.980 kb on + strand, within torCat 1057.988 kb on - strand, within torCat 1057.988 kb on - strand, within torCat 1058.141 kb on - strand, within torCat 1058.187 kb on - strand, within torCat 1058.259 kb on + strand, within torCat 1058.294 kb on + strand, within torCat 1058.453 kb on - strandat 1058.453 kb on - strandat 1058.656 kb on + strandat 1058.889 kb on + strand, within torAat 1058.907 kb on - strand, within torAat 1058.976 kb on + strand, within torAat 1058.976 kb on + strand, within torAat 1058.984 kb on - strand, within torAat 1059.020 kb on + strand, within torAat 1059.020 kb on + strand, within torAat 1059.048 kb on + strand, within torAat 1059.048 kb on + strand, within torAat 1059.109 kb on - strand, within torAat 1059.314 kb on - strand, within torAat 1059.336 kb on - strand, within torAat 1059.336 kb on - strand, within torAat 1059.388 kb on + strand, within torAat 1059.601 kb on + strand, within torAat 1059.625 kb on - strand, within torAat 1059.637 kb on - strand, within torAat 1059.637 kb on - strand, within torAat 1059.706 kb on + strand, within torAat 1059.706 kb on + strand, within torAat 1059.784 kb on + strand, within torAat 1059.826 kb on - strand, within torAat 1060.001 kb on + strand, within torAat 1060.001 kb on + strand, within torAat 1060.234 kb on - strand, within torAat 1060.234 kb on - strand, within torAat 1060.302 kb on - strand, within torAat 1060.302 kb on - strand, within torAat 1060.512 kb on + strand, within torAat 1060.744 kb on - strand, within torAat 1060.754 kb on + strand, within torAat 1060.754 kb on + strand, within torAat 1060.803 kb on + strandat 1060.826 kb on - strandat 1060.826 kb on - strandat 1060.847 kb on - strandat 1060.940 kb on + strandat 1060.989 kb on + strandat 1061.073 kb on + strandat 1061.083 kb on - strand, within torDat 1061.747 kb on - strandat 1061.789 kb on - strandat 1061.879 kb on - strand, within cbpMat 1061.889 kb on - strand, within cbpMat 1061.978 kb on - strand, within cbpMat 1061.978 kb on - strand, within cbpM

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnG
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1,057,487 + torC b0996 0.15 -0.4
1,057,487 + torC b0996 0.15 -1.1
1,057,562 + torC b0996 0.22 +0.9
1,057,562 + torC b0996 0.22 -0.6
1,057,765 + torC b0996 0.39 -0.0
1,057,980 + torC b0996 0.57 +0.4
1,057,988 - torC b0996 0.58 +0.8
1,057,988 - torC b0996 0.58 -0.9
1,058,141 - torC b0996 0.71 -0.2
1,058,187 - torC b0996 0.75 -0.6
1,058,259 + torC b0996 0.81 -0.0
1,058,294 + torC b0996 0.84 -0.0
1,058,453 - +1.5
1,058,453 - +0.3
1,058,656 + +0.2
1,058,889 + torA b0997 0.16 -0.4
1,058,907 - torA b0997 0.17 -0.3
1,058,976 + torA b0997 0.20 -0.1
1,058,976 + torA b0997 0.20 -0.4
1,058,984 - torA b0997 0.20 +0.1
1,059,020 + torA b0997 0.21 +0.2
1,059,020 + torA b0997 0.21 -0.5
1,059,048 + torA b0997 0.22 +0.1
1,059,048 + torA b0997 0.22 +0.9
1,059,109 - torA b0997 0.25 +0.2
1,059,314 - torA b0997 0.33 -0.4
1,059,336 - torA b0997 0.34 +1.3
1,059,336 - torA b0997 0.34 -0.6
1,059,388 + torA b0997 0.36 +0.4
1,059,601 + torA b0997 0.44 -1.4
1,059,625 - torA b0997 0.45 +0.3
1,059,637 - torA b0997 0.45 +0.0
1,059,637 - torA b0997 0.45 -0.7
1,059,706 + torA b0997 0.48 +1.3
1,059,706 + torA b0997 0.48 +0.3
1,059,784 + torA b0997 0.51 +0.0
1,059,826 - torA b0997 0.53 -0.4
1,060,001 + torA b0997 0.60 +1.4
1,060,001 + torA b0997 0.60 +0.4
1,060,234 - torA b0997 0.69 +0.5
1,060,234 - torA b0997 0.69 +1.5
1,060,302 - torA b0997 0.72 -0.2
1,060,302 - torA b0997 0.72 +0.3
1,060,512 + torA b0997 0.80 -0.0
1,060,744 - torA b0997 0.89 -0.5
1,060,754 + torA b0997 0.89 +0.9
1,060,754 + torA b0997 0.89 +0.0
1,060,803 + -0.7
1,060,826 - +0.5
1,060,826 - +0.1
1,060,847 - -0.7
1,060,940 + +0.3
1,060,989 + +0.5
1,061,073 + +0.0
1,061,083 - torD b0998 0.10 -0.3
1,061,747 - -0.0
1,061,789 - -0.2
1,061,879 - cbpM b0999 0.35 -0.1
1,061,889 - cbpM b0999 0.38 +0.3
1,061,978 - cbpM b0999 0.67 -0.2
1,061,978 - cbpM b0999 0.67 +0.7

Or see this region's nucleotide sequence