Experiment: Laval1267
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdF and proV are separated by 353 nucleotides proV and proW overlap by 8 nucleotides
b2676: nrdF - ribonucleotide-diphosphate reductase beta subunit (NCBI), at 2,801,524 to 2,802,483
nrdF
b2677: proV - glycine betaine transporter subunit (NCBI), at 2,802,837 to 2,804,039
proV
b2678: proW - glycine betaine transporter subunit (NCBI), at 2,804,032 to 2,805,096
proW
Position (kb)
2802
2803
2804
2805 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2801.895 kb on - strand, within nrdF at 2801.895 kb on - strand, within nrdF at 2802.009 kb on - strand, within nrdF at 2802.073 kb on - strand, within nrdF at 2802.119 kb on - strand, within nrdF at 2802.216 kb on - strand, within nrdF at 2802.216 kb on - strand, within nrdF at 2802.233 kb on - strand, within nrdF at 2802.293 kb on + strand, within nrdF at 2802.313 kb on + strand, within nrdF at 2802.326 kb on - strand, within nrdF at 2802.326 kb on - strand, within nrdF at 2802.422 kb on - strand at 2802.422 kb on - strand at 2802.424 kb on + strand at 2802.428 kb on + strand at 2802.428 kb on + strand at 2802.428 kb on + strand at 2802.428 kb on + strand at 2802.428 kb on + strand at 2802.431 kb on + strand at 2802.431 kb on + strand at 2802.436 kb on - strand at 2802.438 kb on + strand at 2802.455 kb on + strand at 2802.463 kb on + strand at 2802.463 kb on + strand at 2802.569 kb on + strand at 2802.572 kb on + strand at 2802.575 kb on + strand at 2802.575 kb on + strand at 2802.585 kb on + strand at 2802.585 kb on + strand at 2802.585 kb on + strand at 2802.593 kb on - strand at 2802.717 kb on - strand at 2802.760 kb on - strand at 2802.795 kb on + strand at 2802.797 kb on + strand at 2802.797 kb on + strand at 2802.964 kb on + strand, within proV at 2802.964 kb on + strand, within proV at 2802.982 kb on - strand, within proV at 2803.013 kb on + strand, within proV at 2803.029 kb on - strand, within proV at 2803.029 kb on - strand, within proV at 2803.044 kb on + strand, within proV at 2803.044 kb on + strand, within proV at 2803.045 kb on + strand, within proV at 2803.061 kb on - strand, within proV at 2803.061 kb on - strand, within proV at 2803.066 kb on + strand, within proV at 2803.075 kb on - strand, within proV at 2803.076 kb on - strand, within proV at 2803.088 kb on + strand, within proV at 2803.089 kb on + strand, within proV at 2803.092 kb on - strand, within proV at 2803.097 kb on - strand, within proV at 2803.097 kb on - strand, within proV at 2803.097 kb on - strand, within proV at 2803.110 kb on - strand, within proV at 2803.117 kb on + strand, within proV at 2803.131 kb on + strand, within proV at 2803.135 kb on + strand, within proV at 2803.136 kb on + strand, within proV at 2803.136 kb on + strand, within proV at 2803.169 kb on + strand, within proV at 2803.170 kb on + strand, within proV at 2803.177 kb on - strand, within proV at 2803.177 kb on - strand, within proV at 2803.177 kb on - strand, within proV at 2803.177 kb on - strand, within proV at 2803.178 kb on - strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.193 kb on + strand, within proV at 2803.199 kb on - strand, within proV at 2803.199 kb on - strand, within proV at 2803.201 kb on - strand, within proV at 2803.203 kb on + strand, within proV at 2803.203 kb on + strand, within proV at 2803.203 kb on + strand, within proV at 2803.206 kb on + strand, within proV at 2803.206 kb on + strand, within proV at 2803.208 kb on + strand, within proV at 2803.211 kb on - strand, within proV at 2803.213 kb on + strand, within proV at 2803.213 kb on + strand, within proV at 2803.213 kb on + strand, within proV at 2803.221 kb on - strand, within proV at 2803.221 kb on - strand, within proV at 2803.223 kb on + strand, within proV at 2803.225 kb on + strand, within proV at 2803.225 kb on + strand, within proV at 2803.233 kb on - strand, within proV at 2803.233 kb on - strand, within proV at 2803.233 kb on - strand, within proV at 2803.272 kb on + strand, within proV at 2803.273 kb on + strand, within proV at 2803.273 kb on + strand, within proV at 2803.273 kb on + strand, within proV at 2803.273 kb on + strand, within proV at 2803.275 kb on + strand, within proV at 2803.281 kb on - strand, within proV at 2803.281 kb on - strand, within proV at 2803.283 kb on + strand, within proV at 2803.283 kb on + strand, within proV at 2803.283 kb on + strand, within proV at 2803.313 kb on + strand, within proV at 2803.318 kb on + strand, within proV at 2803.321 kb on - strand, within proV at 2803.328 kb on + strand, within proV at 2803.328 kb on + strand, within proV at 2803.331 kb on + strand, within proV at 2803.331 kb on + strand, within proV at 2803.331 kb on + strand, within proV at 2803.331 kb on + strand, within proV at 2803.331 kb on + strand, within proV at 2803.333 kb on + strand, within proV at 2803.336 kb on - strand, within proV at 2803.336 kb on - strand, within proV at 2803.336 kb on - strand, within proV at 2803.339 kb on - strand, within proV at 2803.339 kb on - strand, within proV at 2803.339 kb on - strand, within proV at 2803.339 kb on - strand, within proV at 2803.339 kb on - strand, within proV at 2803.343 kb on + strand, within proV at 2803.345 kb on + strand, within proV at 2803.347 kb on - strand, within proV at 2803.347 kb on - strand, within proV at 2803.348 kb on + strand, within proV at 2803.349 kb on - strand, within proV at 2803.349 kb on - strand, within proV at 2803.350 kb on + strand, within proV at 2803.350 kb on + strand, within proV at 2803.350 kb on + strand, within proV at 2803.350 kb on + strand, within proV at 2803.351 kb on + strand, within proV at 2803.351 kb on + strand, within proV at 2803.352 kb on + strand, within proV at 2803.356 kb on + strand, within proV at 2803.362 kb on + strand, within proV at 2803.362 kb on + strand, within proV at 2803.364 kb on - strand, within proV at 2803.366 kb on + strand, within proV at 2803.370 kb on - strand, within proV at 2803.442 kb on + strand, within proV at 2803.442 kb on + strand, within proV at 2803.473 kb on + strand, within proV at 2803.473 kb on + strand, within proV at 2803.496 kb on - strand, within proV at 2803.511 kb on + strand, within proV at 2803.515 kb on - strand, within proV at 2803.521 kb on + strand, within proV at 2803.521 kb on + strand, within proV at 2803.521 kb on + strand, within proV at 2803.523 kb on + strand, within proV at 2803.523 kb on + strand, within proV at 2803.523 kb on + strand, within proV at 2803.523 kb on + strand, within proV at 2803.528 kb on - strand, within proV at 2803.528 kb on - strand, within proV at 2803.528 kb on - strand, within proV at 2803.529 kb on - strand, within proV at 2803.531 kb on - strand, within proV at 2803.531 kb on - strand, within proV at 2803.531 kb on - strand, within proV at 2803.533 kb on - strand, within proV at 2803.533 kb on - strand, within proV at 2803.564 kb on + strand, within proV at 2803.564 kb on + strand, within proV at 2803.565 kb on + strand, within proV at 2803.565 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.566 kb on + strand, within proV at 2803.569 kb on - strand, within proV at 2803.569 kb on - strand, within proV at 2803.571 kb on - strand, within proV at 2803.572 kb on - strand, within proV at 2803.573 kb on - strand, within proV at 2803.574 kb on - strand, within proV at 2803.574 kb on - strand, within proV at 2803.579 kb on - strand, within proV at 2803.579 kb on - strand, within proV at 2803.618 kb on + strand, within proV at 2803.623 kb on + strand, within proV at 2803.636 kb on + strand, within proV at 2803.646 kb on - strand, within proV at 2803.649 kb on - strand, within proV at 2803.649 kb on - strand, within proV at 2803.650 kb on - strand, within proV at 2803.660 kb on - strand, within proV at 2803.663 kb on - strand, within proV at 2803.667 kb on + strand, within proV at 2803.675 kb on - strand, within proV at 2803.684 kb on - strand, within proV at 2803.686 kb on - strand, within proV at 2803.705 kb on - strand, within proV at 2803.706 kb on - strand, within proV at 2803.710 kb on + strand, within proV at 2803.728 kb on - strand, within proV at 2803.734 kb on - strand, within proV at 2803.773 kb on + strand, within proV at 2803.809 kb on - strand, within proV at 2803.814 kb on - strand, within proV at 2803.855 kb on + strand, within proV at 2803.855 kb on + strand, within proV at 2803.857 kb on - strand, within proV at 2803.857 kb on - strand, within proV at 2803.872 kb on - strand, within proV at 2803.876 kb on + strand, within proV at 2803.877 kb on + strand, within proV at 2803.933 kb on - strand at 2803.970 kb on - strand at 2803.976 kb on - strand at 2803.978 kb on - strand at 2804.086 kb on - strand at 2804.086 kb on - strand at 2804.086 kb on - strand at 2804.102 kb on + strand at 2804.189 kb on + strand, within proW at 2804.228 kb on - strand, within proW at 2804.228 kb on - strand, within proW at 2804.239 kb on + strand, within proW at 2804.242 kb on + strand, within proW at 2804.242 kb on + strand, within proW at 2804.285 kb on - strand, within proW at 2804.285 kb on - strand, within proW at 2804.350 kb on - strand, within proW at 2804.458 kb on - strand, within proW at 2804.471 kb on - strand, within proW at 2804.471 kb on - strand, within proW at 2804.482 kb on - strand, within proW at 2804.482 kb on - strand, within proW at 2804.484 kb on + strand, within proW at 2804.586 kb on - strand, within proW at 2804.656 kb on - strand, within proW at 2804.778 kb on + strand, within proW at 2804.778 kb on + strand, within proW at 2804.794 kb on + strand, within proW at 2804.843 kb on + strand, within proW at 2804.866 kb on - strand, within proW at 2804.910 kb on - strand, within proW
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1267 remove 2,801,895 - nrdF b2676 0.39 -0.5 2,801,895 - nrdF b2676 0.39 -1.3 2,802,009 - nrdF b2676 0.51 -0.3 2,802,073 - nrdF b2676 0.57 -0.5 2,802,119 - nrdF b2676 0.62 +0.5 2,802,216 - nrdF b2676 0.72 -0.1 2,802,216 - nrdF b2676 0.72 -1.1 2,802,233 - nrdF b2676 0.74 -0.4 2,802,293 + nrdF b2676 0.80 +0.2 2,802,313 + nrdF b2676 0.82 +0.4 2,802,326 - nrdF b2676 0.84 +0.1 2,802,326 - nrdF b2676 0.84 -1.9 2,802,422 - +0.5 2,802,422 - +1.1 2,802,424 + +0.3 2,802,428 + +0.3 2,802,428 + -0.9 2,802,428 + -0.7 2,802,428 + -0.1 2,802,428 + -1.7 2,802,431 + -0.7 2,802,431 + -1.5 2,802,436 - +1.1 2,802,438 + -0.3 2,802,455 + +0.5 2,802,463 + +0.5 2,802,463 + +0.3 2,802,569 + -0.5 2,802,572 + +0.6 2,802,575 + +0.8 2,802,575 + -1.5 2,802,585 + -1.0 2,802,585 + +0.3 2,802,585 + -0.0 2,802,593 - +1.1 2,802,717 - +1.1 2,802,760 - +1.1 2,802,795 + +0.5 2,802,797 + -0.6 2,802,797 + -0.5 2,802,964 + proV b2677 0.11 +0.1 2,802,964 + proV b2677 0.11 +1.1 2,802,982 - proV b2677 0.12 +0.1 2,803,013 + proV b2677 0.15 -0.5 2,803,029 - proV b2677 0.16 -0.5 2,803,029 - proV b2677 0.16 +4.4 2,803,044 + proV b2677 0.17 +1.5 2,803,044 + proV b2677 0.17 +0.7 2,803,045 + proV b2677 0.17 -0.5 2,803,061 - proV b2677 0.19 +1.1 2,803,061 - proV b2677 0.19 +1.5 2,803,066 + proV b2677 0.19 +0.8 2,803,075 - proV b2677 0.20 -0.5 2,803,076 - proV b2677 0.20 +0.9 2,803,088 + proV b2677 0.21 +3.0 2,803,089 + proV b2677 0.21 +1.8 2,803,092 - proV b2677 0.21 +0.9 2,803,097 - proV b2677 0.22 -0.9 2,803,097 - proV b2677 0.22 +1.1 2,803,097 - proV b2677 0.22 -0.5 2,803,110 - proV b2677 0.23 -0.2 2,803,117 + proV b2677 0.23 -0.2 2,803,131 + proV b2677 0.24 -1.1 2,803,135 + proV b2677 0.25 +0.8 2,803,136 + proV b2677 0.25 +0.6 2,803,136 + proV b2677 0.25 +1.4 2,803,169 + proV b2677 0.28 +0.5 2,803,170 + proV b2677 0.28 +1.1 2,803,177 - proV b2677 0.28 -0.5 2,803,177 - proV b2677 0.28 +1.1 2,803,177 - proV b2677 0.28 -0.1 2,803,177 - proV b2677 0.28 +1.8 2,803,178 - proV b2677 0.28 -0.3 2,803,193 + proV b2677 0.30 +0.1 2,803,193 + proV b2677 0.30 +1.1 2,803,193 + proV b2677 0.30 +0.9 2,803,193 + proV b2677 0.30 +0.1 2,803,193 + proV b2677 0.30 +1.1 2,803,193 + proV b2677 0.30 -1.2 2,803,193 + proV b2677 0.30 +1.7 2,803,193 + proV b2677 0.30 +0.1 2,803,199 - proV b2677 0.30 +0.7 2,803,199 - proV b2677 0.30 +0.4 2,803,201 - proV b2677 0.30 +0.7 2,803,203 + proV b2677 0.30 +1.6 2,803,203 + proV b2677 0.30 +0.3 2,803,203 + proV b2677 0.30 +0.8 2,803,206 + proV b2677 0.31 +0.4 2,803,206 + proV b2677 0.31 +0.6 2,803,208 + proV b2677 0.31 +0.6 2,803,211 - proV b2677 0.31 +0.7 2,803,213 + proV b2677 0.31 +1.7 2,803,213 + proV b2677 0.31 +2.8 2,803,213 + proV b2677 0.31 +0.3 2,803,221 - proV b2677 0.32 +1.5 2,803,221 - proV b2677 0.32 -0.5 2,803,223 + proV b2677 0.32 +1.2 2,803,225 + proV b2677 0.32 +3.1 2,803,225 + proV b2677 0.32 +1.6 2,803,233 - proV b2677 0.33 +2.1 2,803,233 - proV b2677 0.33 -0.2 2,803,233 - proV b2677 0.33 +2.4 2,803,272 + proV b2677 0.36 +1.1 2,803,273 + proV b2677 0.36 +1.8 2,803,273 + proV b2677 0.36 +0.1 2,803,273 + proV b2677 0.36 +2.1 2,803,273 + proV b2677 0.36 +0.1 2,803,275 + proV b2677 0.36 -0.1 2,803,281 - proV b2677 0.37 +0.3 2,803,281 - proV b2677 0.37 +0.6 2,803,283 + proV b2677 0.37 +0.4 2,803,283 + proV b2677 0.37 -2.1 2,803,283 + proV b2677 0.37 +2.1 2,803,313 + proV b2677 0.40 +3.0 2,803,318 + proV b2677 0.40 +1.0 2,803,321 - proV b2677 0.40 +1.8 2,803,328 + proV b2677 0.41 -0.7 2,803,328 + proV b2677 0.41 +1.7 2,803,331 + proV b2677 0.41 +0.8 2,803,331 + proV b2677 0.41 +1.7 2,803,331 + proV b2677 0.41 +1.4 2,803,331 + proV b2677 0.41 +0.8 2,803,331 + proV b2677 0.41 +0.1 2,803,333 + proV b2677 0.41 +0.1 2,803,336 - proV b2677 0.41 +1.0 2,803,336 - proV b2677 0.41 +0.6 2,803,336 - proV b2677 0.41 -0.6 2,803,339 - proV b2677 0.42 -0.5 2,803,339 - proV b2677 0.42 -0.5 2,803,339 - proV b2677 0.42 +2.1 2,803,339 - proV b2677 0.42 +2.1 2,803,339 - proV b2677 0.42 +0.5 2,803,343 + proV b2677 0.42 +1.0 2,803,345 + proV b2677 0.42 +0.4 2,803,347 - proV b2677 0.42 +1.1 2,803,347 - proV b2677 0.42 -0.9 2,803,348 + proV b2677 0.42 +0.3 2,803,349 - proV b2677 0.43 +0.1 2,803,349 - proV b2677 0.43 +1.1 2,803,350 + proV b2677 0.43 +1.9 2,803,350 + proV b2677 0.43 +0.3 2,803,350 + proV b2677 0.43 +0.6 2,803,350 + proV b2677 0.43 +0.7 2,803,351 + proV b2677 0.43 +1.5 2,803,351 + proV b2677 0.43 +0.9 2,803,352 + proV b2677 0.43 +0.9 2,803,356 + proV b2677 0.43 +3.6 2,803,362 + proV b2677 0.44 +0.9 2,803,362 + proV b2677 0.44 -0.5 2,803,364 - proV b2677 0.44 +0.1 2,803,366 + proV b2677 0.44 +1.0 2,803,370 - proV b2677 0.44 +2.1 2,803,442 + proV b2677 0.50 +1.9 2,803,442 + proV b2677 0.50 +1.1 2,803,473 + proV b2677 0.53 -0.7 2,803,473 + proV b2677 0.53 +0.6 2,803,496 - proV b2677 0.55 -0.4 2,803,511 + proV b2677 0.56 +1.1 2,803,515 - proV b2677 0.56 -0.0 2,803,521 + proV b2677 0.57 -1.0 2,803,521 + proV b2677 0.57 +1.8 2,803,521 + proV b2677 0.57 +2.1 2,803,523 + proV b2677 0.57 +1.6 2,803,523 + proV b2677 0.57 +3.2 2,803,523 + proV b2677 0.57 -0.9 2,803,523 + proV b2677 0.57 -0.5 2,803,528 - proV b2677 0.57 +0.5 2,803,528 - proV b2677 0.57 +1.1 2,803,528 - proV b2677 0.57 +0.6 2,803,529 - proV b2677 0.58 +0.7 2,803,531 - proV b2677 0.58 +1.5 2,803,531 - proV b2677 0.58 +1.8 2,803,531 - proV b2677 0.58 +0.8 2,803,533 - proV b2677 0.58 +0.5 2,803,533 - proV b2677 0.58 +0.6 2,803,564 + proV b2677 0.60 +0.1 2,803,564 + proV b2677 0.60 +2.9 2,803,565 + proV b2677 0.61 +1.1 2,803,565 + proV b2677 0.61 +1.7 2,803,566 + proV b2677 0.61 +1.3 2,803,566 + proV b2677 0.61 +1.4 2,803,566 + proV b2677 0.61 +0.6 2,803,566 + proV b2677 0.61 +1.0 2,803,566 + proV b2677 0.61 -0.5 2,803,566 + proV b2677 0.61 -1.1 2,803,569 - proV b2677 0.61 +1.5 2,803,569 - proV b2677 0.61 +1.2 2,803,571 - proV b2677 0.61 +1.0 2,803,572 - proV b2677 0.61 +0.8 2,803,573 - proV b2677 0.61 +0.8 2,803,574 - proV b2677 0.61 -0.5 2,803,574 - proV b2677 0.61 +1.4 2,803,579 - proV b2677 0.62 +0.7 2,803,579 - proV b2677 0.62 -0.5 2,803,618 + proV b2677 0.65 +1.6 2,803,623 + proV b2677 0.65 +0.8 2,803,636 + proV b2677 0.66 +1.2 2,803,646 - proV b2677 0.67 +0.6 2,803,649 - proV b2677 0.67 +0.8 2,803,649 - proV b2677 0.67 +0.7 2,803,650 - proV b2677 0.68 +2.0 2,803,660 - proV b2677 0.68 +1.0 2,803,663 - proV b2677 0.69 +0.6 2,803,667 + proV b2677 0.69 -0.0 2,803,675 - proV b2677 0.70 +0.3 2,803,684 - proV b2677 0.70 +1.0 2,803,686 - proV b2677 0.71 +1.7 2,803,705 - proV b2677 0.72 +0.8 2,803,706 - proV b2677 0.72 +1.2 2,803,710 + proV b2677 0.73 +1.0 2,803,728 - proV b2677 0.74 +0.9 2,803,734 - proV b2677 0.75 +0.7 2,803,773 + proV b2677 0.78 +2.8 2,803,809 - proV b2677 0.81 +1.0 2,803,814 - proV b2677 0.81 +0.5 2,803,855 + proV b2677 0.85 +1.0 2,803,855 + proV b2677 0.85 +0.9 2,803,857 - proV b2677 0.85 +0.6 2,803,857 - proV b2677 0.85 +2.0 2,803,872 - proV b2677 0.86 +0.1 2,803,876 + proV b2677 0.86 +0.6 2,803,877 + proV b2677 0.86 +0.4 2,803,933 - +1.0 2,803,970 - +0.8 2,803,976 - +0.8 2,803,978 - +1.1 2,804,086 - +1.9 2,804,086 - -0.8 2,804,086 - +0.6 2,804,102 + +0.5 2,804,189 + proW b2678 0.15 +1.5 2,804,228 - proW b2678 0.18 -1.9 2,804,228 - proW b2678 0.18 +1.3 2,804,239 + proW b2678 0.19 +0.9 2,804,242 + proW b2678 0.20 +2.1 2,804,242 + proW b2678 0.20 +0.6 2,804,285 - proW b2678 0.24 +0.9 2,804,285 - proW b2678 0.24 +0.5 2,804,350 - proW b2678 0.30 -0.1 2,804,458 - proW b2678 0.40 +0.8 2,804,471 - proW b2678 0.41 +1.6 2,804,471 - proW b2678 0.41 +1.3 2,804,482 - proW b2678 0.42 -1.1 2,804,482 - proW b2678 0.42 +1.3 2,804,484 + proW b2678 0.42 -0.4 2,804,586 - proW b2678 0.52 +1.1 2,804,656 - proW b2678 0.59 +1.1 2,804,778 + proW b2678 0.70 +0.0 2,804,778 + proW b2678 0.70 +1.5 2,804,794 + proW b2678 0.72 +0.5 2,804,843 + proW b2678 0.76 -0.4 2,804,866 - proW b2678 0.78 +0.5 2,804,910 - proW b2678 0.82 +0.4
Or see this region's nucleotide sequence