Experiment: Lambda_ci1857
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldrB and rdlB are separated by 47 nucleotides rdlB and ldrC are separated by 314 nucleotides ldrC and rdlC are separated by 47 nucleotides rdlC and chaA are separated by 288 nucleotides
b4421: ldrB - toxic polypeptide, small (NCBI), at 1,268,926 to 1,269,033
ldrB
b4422: rdlB - regulatory antisense sRNA (NCBI), at 1,269,081 to 1,269,146
rdlB
b4423: ldrC - toxic polypeptide, small (NCBI), at 1,269,461 to 1,269,568
ldrC
b4424: rdlC - regulatory antisense sRNA (NCBI), at 1,269,616 to 1,269,683
rdlC
b1216: chaA - calcium/sodium:proton antiporter (NCBI), at 1,269,972 to 1,271,072
chaA
Position (kb)
1269
1270 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1268.787 kb on + strand at 1268.787 kb on + strand at 1269.230 kb on + strand at 1269.731 kb on + strand at 1269.734 kb on - strand at 1269.734 kb on - strand at 1269.795 kb on - strand at 1269.795 kb on - strand at 1269.846 kb on + strand at 1269.854 kb on + strand at 1269.854 kb on + strand at 1269.856 kb on + strand at 1269.856 kb on - strand at 1269.858 kb on - strand at 1269.858 kb on - strand at 1269.864 kb on - strand at 1269.864 kb on - strand at 1269.864 kb on - strand at 1269.891 kb on + strand at 1270.007 kb on + strand at 1270.015 kb on - strand at 1270.019 kb on - strand at 1270.034 kb on + strand at 1270.042 kb on - strand at 1270.060 kb on + strand at 1270.060 kb on + strand at 1270.067 kb on - strand at 1270.067 kb on - strand at 1270.073 kb on + strand at 1270.073 kb on + strand at 1270.078 kb on - strand at 1270.078 kb on - strand at 1270.088 kb on - strand, within chaA at 1270.133 kb on - strand, within chaA at 1270.228 kb on - strand, within chaA at 1270.240 kb on + strand, within chaA at 1270.247 kb on - strand, within chaA at 1270.248 kb on - strand, within chaA at 1270.248 kb on - strand, within chaA at 1270.250 kb on + strand, within chaA at 1270.415 kb on - strand, within chaA at 1270.552 kb on + strand, within chaA at 1270.588 kb on + strand, within chaA at 1270.615 kb on + strand, within chaA at 1270.622 kb on - strand, within chaA at 1270.637 kb on + strand, within chaA at 1270.639 kb on + strand, within chaA
Per-strain Table
Position Strand Gene LocusTag Fraction Lambda_ci1857 remove 1,268,787 + -0.1 1,268,787 + -0.4 1,269,230 + -0.1 1,269,731 + +0.5 1,269,734 - +0.1 1,269,734 - -0.4 1,269,795 - -0.6 1,269,795 - +0.6 1,269,846 + -0.6 1,269,854 + -0.7 1,269,854 + -2.8 1,269,856 + -2.5 1,269,856 - -0.1 1,269,858 - -0.3 1,269,858 - +0.1 1,269,864 - -0.1 1,269,864 - -1.2 1,269,864 - -1.7 1,269,891 + -1.6 1,270,007 + +1.7 1,270,015 - -0.6 1,270,019 - +0.1 1,270,034 + +1.7 1,270,042 - +0.1 1,270,060 + +0.4 1,270,060 + +0.4 1,270,067 - +0.0 1,270,067 - +0.3 1,270,073 + -1.0 1,270,073 + +0.2 1,270,078 - +1.4 1,270,078 - -0.2 1,270,088 - chaA b1216 0.11 -1.9 1,270,133 - chaA b1216 0.15 -1.2 1,270,228 - chaA b1216 0.23 -0.1 1,270,240 + chaA b1216 0.24 -0.0 1,270,247 - chaA b1216 0.25 +0.2 1,270,248 - chaA b1216 0.25 -0.9 1,270,248 - chaA b1216 0.25 -1.6 1,270,250 + chaA b1216 0.25 -0.6 1,270,415 - chaA b1216 0.40 -0.3 1,270,552 + chaA b1216 0.53 -0.7 1,270,588 + chaA b1216 0.56 +1.9 1,270,615 + chaA b1216 0.58 -0.6 1,270,622 - chaA b1216 0.59 -0.3 1,270,637 + chaA b1216 0.60 +0.4 1,270,639 + chaA b1216 0.61 +1.6
Or see this region's nucleotide sequence