Strain Fitness in Escherichia coli BW25113 around b4424

Experiment: Lambda_ci1857

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntldrB and rdlB are separated by 47 nucleotidesrdlB and ldrC are separated by 314 nucleotidesldrC and rdlC are separated by 47 nucleotidesrdlC and chaA are separated by 288 nucleotides b4421: ldrB - toxic polypeptide, small (NCBI), at 1,268,926 to 1,269,033 ldrB b4422: rdlB - regulatory antisense sRNA (NCBI), at 1,269,081 to 1,269,146 rdlB b4423: ldrC - toxic polypeptide, small (NCBI), at 1,269,461 to 1,269,568 ldrC b4424: rdlC - regulatory antisense sRNA (NCBI), at 1,269,616 to 1,269,683 rdlC b1216: chaA - calcium/sodium:proton antiporter (NCBI), at 1,269,972 to 1,271,072 chaA Position (kb) 1269 1270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1268.787 kb on + strandat 1268.787 kb on + strandat 1269.230 kb on + strandat 1269.731 kb on + strandat 1269.734 kb on - strandat 1269.734 kb on - strandat 1269.795 kb on - strandat 1269.795 kb on - strandat 1269.846 kb on + strandat 1269.854 kb on + strandat 1269.854 kb on + strandat 1269.856 kb on + strandat 1269.856 kb on - strandat 1269.858 kb on - strandat 1269.858 kb on - strandat 1269.864 kb on - strandat 1269.864 kb on - strandat 1269.864 kb on - strandat 1269.891 kb on + strandat 1270.007 kb on + strandat 1270.015 kb on - strandat 1270.019 kb on - strandat 1270.034 kb on + strandat 1270.042 kb on - strandat 1270.060 kb on + strandat 1270.060 kb on + strandat 1270.067 kb on - strandat 1270.067 kb on - strandat 1270.073 kb on + strandat 1270.073 kb on + strandat 1270.078 kb on - strandat 1270.078 kb on - strandat 1270.088 kb on - strand, within chaAat 1270.133 kb on - strand, within chaAat 1270.228 kb on - strand, within chaAat 1270.240 kb on + strand, within chaAat 1270.247 kb on - strand, within chaAat 1270.248 kb on - strand, within chaAat 1270.248 kb on - strand, within chaAat 1270.250 kb on + strand, within chaAat 1270.415 kb on - strand, within chaAat 1270.552 kb on + strand, within chaAat 1270.588 kb on + strand, within chaAat 1270.615 kb on + strand, within chaAat 1270.622 kb on - strand, within chaAat 1270.637 kb on + strand, within chaAat 1270.639 kb on + strand, within chaA

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Per-strain Table

Position Strand Gene LocusTag Fraction Lambda_ci1857
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1,268,787 + -0.1
1,268,787 + -0.4
1,269,230 + -0.1
1,269,731 + +0.5
1,269,734 - +0.1
1,269,734 - -0.4
1,269,795 - -0.6
1,269,795 - +0.6
1,269,846 + -0.6
1,269,854 + -0.7
1,269,854 + -2.8
1,269,856 + -2.5
1,269,856 - -0.1
1,269,858 - -0.3
1,269,858 - +0.1
1,269,864 - -0.1
1,269,864 - -1.2
1,269,864 - -1.7
1,269,891 + -1.6
1,270,007 + +1.7
1,270,015 - -0.6
1,270,019 - +0.1
1,270,034 + +1.7
1,270,042 - +0.1
1,270,060 + +0.4
1,270,060 + +0.4
1,270,067 - +0.0
1,270,067 - +0.3
1,270,073 + -1.0
1,270,073 + +0.2
1,270,078 - +1.4
1,270,078 - -0.2
1,270,088 - chaA b1216 0.11 -1.9
1,270,133 - chaA b1216 0.15 -1.2
1,270,228 - chaA b1216 0.23 -0.1
1,270,240 + chaA b1216 0.24 -0.0
1,270,247 - chaA b1216 0.25 +0.2
1,270,248 - chaA b1216 0.25 -0.9
1,270,248 - chaA b1216 0.25 -1.6
1,270,250 + chaA b1216 0.25 -0.6
1,270,415 - chaA b1216 0.40 -0.3
1,270,552 + chaA b1216 0.53 -0.7
1,270,588 + chaA b1216 0.56 +1.9
1,270,615 + chaA b1216 0.58 -0.6
1,270,622 - chaA b1216 0.59 -0.3
1,270,637 + chaA b1216 0.60 +0.4
1,270,639 + chaA b1216 0.61 +1.6

Or see this region's nucleotide sequence