Strain Fitness in Escherichia coli BW25113 around b2749

Experiment: Control_Tn2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntispD and ftsB are separated by 18 nucleotidesftsB and ygbE are separated by 193 nucleotidesygbE and cysC are separated by 49 nucleotidescysC and cysN overlap by 1 nucleotides b2747: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (NCBI), at 2,869,802 to 2,870,512 ispD b2748: ftsB - cell divison protein FtsB (NCBI), at 2,870,531 to 2,870,842 ftsB b2749: ygbE - conserved inner membrane protein (NCBI), at 2,871,036 to 2,871,359 ygbE b2750: cysC - adenylylsulfate kinase (NCBI), at 2,871,409 to 2,872,014 cysC b2751: cysN - sulfate adenylyltransferase subunit 1 (NCBI), at 2,872,014 to 2,873,441 cysN Position (kb) 2871 2872Strain fitness (log2 ratio) -1 0 1at 2870.948 kb on + strandat 2870.948 kb on + strandat 2870.959 kb on + strandat 2870.977 kb on - strandat 2871.097 kb on + strand, within ygbEat 2871.140 kb on - strand, within ygbEat 2871.145 kb on - strand, within ygbEat 2871.145 kb on - strand, within ygbEat 2871.149 kb on + strand, within ygbEat 2871.197 kb on - strand, within ygbEat 2871.197 kb on - strand, within ygbEat 2871.197 kb on - strand, within ygbEat 2871.207 kb on - strand, within ygbEat 2871.207 kb on - strand, within ygbEat 2871.248 kb on + strand, within ygbEat 2871.285 kb on - strand, within ygbEat 2871.290 kb on + strand, within ygbEat 2871.311 kb on + strand, within ygbEat 2871.391 kb on + strandat 2871.421 kb on - strandat 2871.534 kb on - strand, within cysCat 2871.692 kb on - strand, within cysCat 2871.703 kb on + strand, within cysCat 2871.807 kb on - strand, within cysCat 2871.807 kb on - strand, within cysCat 2871.866 kb on + strand, within cysCat 2871.866 kb on + strand, within cysCat 2871.907 kb on - strand, within cysCat 2871.911 kb on - strand, within cysCat 2871.919 kb on + strand, within cysCat 2871.952 kb on + strand, within cysCat 2871.953 kb on - strand, within cysCat 2871.966 kb on - strandat 2871.968 kb on - strandat 2872.057 kb on - strandat 2872.264 kb on + strand, within cysNat 2872.298 kb on + strand, within cysN

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_Tn2
remove
2,870,948 + -0.8
2,870,948 + -1.1
2,870,959 + +0.7
2,870,977 - +0.2
2,871,097 + ygbE b2749 0.19 -0.6
2,871,140 - ygbE b2749 0.32 -0.3
2,871,145 - ygbE b2749 0.34 +1.0
2,871,145 - ygbE b2749 0.34 +0.3
2,871,149 + ygbE b2749 0.35 -0.6
2,871,197 - ygbE b2749 0.50 -0.0
2,871,197 - ygbE b2749 0.50 +0.5
2,871,197 - ygbE b2749 0.50 -1.1
2,871,207 - ygbE b2749 0.53 +0.6
2,871,207 - ygbE b2749 0.53 -0.2
2,871,248 + ygbE b2749 0.65 +0.0
2,871,285 - ygbE b2749 0.77 +0.1
2,871,290 + ygbE b2749 0.78 +1.0
2,871,311 + ygbE b2749 0.85 +0.0
2,871,391 + -0.2
2,871,421 - +0.2
2,871,534 - cysC b2750 0.21 -0.8
2,871,692 - cysC b2750 0.47 -0.5
2,871,703 + cysC b2750 0.49 +0.1
2,871,807 - cysC b2750 0.66 +0.1
2,871,807 - cysC b2750 0.66 +0.1
2,871,866 + cysC b2750 0.75 -0.2
2,871,866 + cysC b2750 0.75 -0.1
2,871,907 - cysC b2750 0.82 +0.8
2,871,911 - cysC b2750 0.83 -0.2
2,871,919 + cysC b2750 0.84 -0.3
2,871,952 + cysC b2750 0.90 -0.3
2,871,953 - cysC b2750 0.90 -0.5
2,871,966 - +0.7
2,871,968 - -1.0
2,872,057 - -0.2
2,872,264 + cysN b2751 0.18 -0.5
2,872,298 + cysN b2751 0.20 -0.2

Or see this region's nucleotide sequence