Strain Fitness in Escherichia coli BW25113 around b2062

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2060 and wzb are separated by 2 nucleotideswzb and wza are separated by 5 nucleotideswza and yegH are separated by 658 nucleotides b2060: b2060 - orf, hypothetical protein (VIMSS), at 2,131,514 to 2,133,676 b2060 b2061: wzb - protein-tyrosine phosphatase (NCBI), at 2,133,679 to 2,134,122 wzb b2062: wza - lipoprotein required for capsular polysaccharide translocation through the outer membrane (NCBI), at 2,134,128 to 2,135,267 wza b2063: yegH - putative transport protein (VIMSS), at 2,135,926 to 2,137,509 yegH Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2133.348 kb on - strand, within b2060at 2133.494 kb on - strandat 2133.538 kb on - strandat 2133.685 kb on - strandat 2134.043 kb on + strand, within wzbat 2134.142 kb on - strandat 2134.142 kb on - strandat 2134.157 kb on - strandat 2134.208 kb on - strandat 2134.244 kb on - strand, within wzaat 2134.244 kb on - strand, within wzaat 2134.329 kb on + strand, within wzaat 2134.385 kb on + strand, within wzaat 2134.409 kb on + strand, within wzaat 2134.417 kb on - strand, within wzaat 2134.417 kb on - strand, within wzaat 2134.427 kb on - strand, within wzaat 2134.427 kb on - strand, within wzaat 2134.545 kb on + strand, within wzaat 2134.545 kb on + strand, within wzaat 2134.545 kb on + strand, within wzaat 2134.599 kb on + strand, within wzaat 2134.604 kb on + strand, within wzaat 2134.744 kb on + strand, within wzaat 2134.801 kb on - strand, within wzaat 2134.801 kb on - strand, within wzaat 2134.961 kb on + strand, within wzaat 2134.991 kb on - strand, within wzaat 2134.993 kb on - strand, within wzaat 2134.993 kb on - strand, within wzaat 2135.044 kb on + strand, within wzaat 2135.052 kb on - strand, within wzaat 2135.052 kb on - strand, within wzaat 2135.055 kb on - strand, within wzaat 2135.055 kb on - strand, within wzaat 2135.058 kb on + strand, within wzaat 2135.072 kb on - strand, within wzaat 2135.075 kb on + strand, within wzaat 2135.082 kb on - strand, within wzaat 2135.082 kb on - strand, within wzaat 2135.093 kb on + strand, within wzaat 2135.106 kb on + strand, within wzaat 2135.114 kb on - strand, within wzaat 2135.116 kb on - strand, within wzaat 2135.137 kb on + strand, within wzaat 2135.176 kb on + strandat 2135.190 kb on + strandat 2135.193 kb on + strandat 2135.195 kb on + strandat 2135.195 kb on + strandat 2135.219 kb on + strandat 2135.421 kb on - strandat 2135.441 kb on - strandat 2135.450 kb on + strandat 2135.904 kb on - strandat 2135.920 kb on + strandat 2135.932 kb on - strandat 2135.944 kb on + strandat 2135.945 kb on + strandat 2135.945 kb on + strandat 2135.954 kb on + strandat 2136.074 kb on - strandat 2136.150 kb on + strand, within yegHat 2136.150 kb on + strand, within yegHat 2136.150 kb on + strand, within yegHat 2136.257 kb on + strand, within yegHat 2136.257 kb on + strand, within yegH

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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2,133,348 - b2060 b2060 0.85 -0.7
2,133,494 - -1.6
2,133,538 - -1.5
2,133,685 - -0.5
2,134,043 + wzb b2061 0.82 -1.4
2,134,142 - -2.8
2,134,142 - -3.0
2,134,157 - -1.3
2,134,208 - -2.8
2,134,244 - wza b2062 0.10 -1.1
2,134,244 - wza b2062 0.10 -1.0
2,134,329 + wza b2062 0.18 -1.0
2,134,385 + wza b2062 0.23 -1.2
2,134,409 + wza b2062 0.25 -1.0
2,134,417 - wza b2062 0.25 -2.6
2,134,417 - wza b2062 0.25 -1.8
2,134,427 - wza b2062 0.26 -1.2
2,134,427 - wza b2062 0.26 -2.8
2,134,545 + wza b2062 0.37 -1.1
2,134,545 + wza b2062 0.37 -1.5
2,134,545 + wza b2062 0.37 -2.1
2,134,599 + wza b2062 0.41 -0.7
2,134,604 + wza b2062 0.42 -1.3
2,134,744 + wza b2062 0.54 -2.6
2,134,801 - wza b2062 0.59 -1.3
2,134,801 - wza b2062 0.59 -2.6
2,134,961 + wza b2062 0.73 -1.3
2,134,991 - wza b2062 0.76 -2.4
2,134,993 - wza b2062 0.76 -1.3
2,134,993 - wza b2062 0.76 -1.0
2,135,044 + wza b2062 0.80 -1.9
2,135,052 - wza b2062 0.81 -3.2
2,135,052 - wza b2062 0.81 -2.0
2,135,055 - wza b2062 0.81 -1.4
2,135,055 - wza b2062 0.81 -3.5
2,135,058 + wza b2062 0.82 +0.2
2,135,072 - wza b2062 0.83 -0.8
2,135,075 + wza b2062 0.83 -1.9
2,135,082 - wza b2062 0.84 -0.6
2,135,082 - wza b2062 0.84 -0.9
2,135,093 + wza b2062 0.85 -2.2
2,135,106 + wza b2062 0.86 -0.9
2,135,114 - wza b2062 0.86 -2.0
2,135,116 - wza b2062 0.87 -2.6
2,135,137 + wza b2062 0.89 -0.9
2,135,176 + -0.4
2,135,190 + -0.4
2,135,193 + +2.0
2,135,195 + -0.9
2,135,195 + -0.6
2,135,219 + +1.0
2,135,421 - +1.6
2,135,441 - +1.6
2,135,450 + +1.6
2,135,904 - -2.2
2,135,920 + +0.4
2,135,932 - -0.3
2,135,944 + -0.1
2,135,945 + -0.5
2,135,945 + -0.2
2,135,954 + -0.3
2,136,074 - -1.4
2,136,150 + yegH b2063 0.14 +1.2
2,136,150 + yegH b2063 0.14 +0.2
2,136,150 + yegH b2063 0.14 -0.5
2,136,257 + yegH b2063 0.21 -0.5
2,136,257 + yegH b2063 0.21 +0.3

Or see this region's nucleotide sequence