Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdR and rnk are separated by 230 nucleotides rnk and rna are separated by 229 nucleotides rna and citT are separated by 113 nucleotides
b0608: ybdR - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 641,311 to 642,549
ybdR
b0610: rnk - nucleoside diphosphate kinase regulator (NCBI), at 642,780 to 643,190
rnk
b0611: rna - ribonuclease I (NCBI), at 643,420 to 644,226
rna
b0612: citT - citrate:succinate antiporter (NCBI), at 644,340 to 645,803
citT
Position (kb) 643
644
645 Strain fitness (log2 ratio) -1
0
1 at 642.665 kb on + strand at 642.665 kb on + strand at 642.747 kb on - strand at 642.750 kb on - strand at 642.750 kb on - strand at 642.784 kb on + strand at 642.785 kb on - strand at 642.890 kb on + strand, within rnk at 642.922 kb on + strand, within rnk at 643.290 kb on - strand at 643.339 kb on + strand at 643.347 kb on - strand at 643.530 kb on + strand, within rna at 643.726 kb on - strand, within rna at 643.817 kb on + strand, within rna at 643.950 kb on - strand, within rna at 643.967 kb on + strand, within rna at 644.107 kb on + strand, within rna at 644.115 kb on - strand, within rna at 644.115 kb on - strand, within rna at 644.115 kb on - strand, within rna at 644.244 kb on + strand at 644.244 kb on + strand at 644.244 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.335 kb on - strand at 644.387 kb on - strand at 644.506 kb on + strand, within citT at 644.630 kb on + strand, within citT at 644.690 kb on + strand, within citT at 644.690 kb on + strand, within citT at 644.704 kb on - strand, within citT at 644.704 kb on - strand, within citT at 644.779 kb on + strand, within citT at 644.787 kb on - strand, within citT at 644.802 kb on - strand, within citT at 644.802 kb on - strand, within citT at 644.848 kb on - strand, within citT at 644.870 kb on + strand, within citT at 644.875 kb on - strand, within citT at 644.906 kb on + strand, within citT at 644.916 kb on - strand, within citT at 644.919 kb on - strand, within citT at 645.001 kb on + strand, within citT at 645.095 kb on - strand, within citT at 645.155 kb on - strand, within citT at 645.155 kb on - strand, within citT at 645.163 kb on - strand, within citT
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 642,665 + +0.8 642,665 + +0.3 642,747 - -0.2 642,750 - +1.0 642,750 - +0.2 642,784 + +0.0 642,785 - -0.5 642,890 + rnk b0610 0.27 -0.3 642,922 + rnk b0610 0.35 -0.6 643,290 - -0.1 643,339 + -0.1 643,347 - +0.2 643,530 + rna b0611 0.14 +0.3 643,726 - rna b0611 0.38 -0.2 643,817 + rna b0611 0.49 +0.6 643,950 - rna b0611 0.66 -0.3 643,967 + rna b0611 0.68 +0.4 644,107 + rna b0611 0.85 -0.1 644,115 - rna b0611 0.86 -1.5 644,115 - rna b0611 0.86 +1.3 644,115 - rna b0611 0.86 +1.0 644,244 + -1.4 644,244 + +0.1 644,244 + -0.7 644,248 - -0.2 644,248 - +0.1 644,335 - -0.6 644,387 - -0.3 644,506 + citT b0612 0.11 -1.1 644,630 + citT b0612 0.20 +0.3 644,690 + citT b0612 0.24 +1.7 644,690 + citT b0612 0.24 +0.5 644,704 - citT b0612 0.25 -1.1 644,704 - citT b0612 0.25 -0.3 644,779 + citT b0612 0.30 +0.5 644,787 - citT b0612 0.31 +0.1 644,802 - citT b0612 0.32 +0.6 644,802 - citT b0612 0.32 +1.1 644,848 - citT b0612 0.35 +0.2 644,870 + citT b0612 0.36 +0.5 644,875 - citT b0612 0.37 -1.4 644,906 + citT b0612 0.39 +0.7 644,916 - citT b0612 0.39 +0.3 644,919 - citT b0612 0.40 -0.3 645,001 + citT b0612 0.45 -0.0 645,095 - citT b0612 0.52 -0.0 645,155 - citT b0612 0.56 -1.3 645,155 - citT b0612 0.56 +0.1 645,163 - citT b0612 0.56 -0.3
Or see this region's nucleotide sequence