Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnM and phnL overlap by 4 nucleotides phnL and phnK are separated by 110 nucleotides phnK and phnJ overlap by 4 nucleotides phnJ and phnI overlap by 8 nucleotides
b4095: phnM - carbon-phosphorus lyase complex subunit (NCBI), at 4,314,105 to 4,315,241
phnM
b4096: phnL - carbon-phosphorus lyase complex subunit (NCBI), at 4,315,238 to 4,315,918
phnL
b4097: phnK - carbon-phosphorus lyase complex subunit (NCBI), at 4,316,029 to 4,316,787
phnK
b4098: phnJ - carbon-phosphorus lyase complex subunit (NCBI), at 4,316,784 to 4,317,629
phnJ
b4099: phnI - carbon-phosphorus lyase complex subunit (NCBI), at 4,317,622 to 4,318,686
phnI
Position (kb)
4316
4317 Strain fitness (log2 ratio)
-2
-1
0
1 at 4315.181 kb on - strand at 4315.192 kb on - strand at 4315.192 kb on - strand at 4315.200 kb on - strand at 4315.288 kb on - strand at 4315.408 kb on + strand, within phnL at 4315.507 kb on + strand, within phnL at 4315.516 kb on - strand, within phnL at 4315.516 kb on - strand, within phnL at 4315.585 kb on - strand, within phnL at 4315.585 kb on - strand, within phnL at 4315.720 kb on - strand, within phnL at 4315.740 kb on + strand, within phnL at 4315.740 kb on + strand, within phnL at 4315.751 kb on + strand, within phnL at 4316.095 kb on + strand at 4316.185 kb on + strand, within phnK at 4316.185 kb on + strand, within phnK at 4316.208 kb on - strand, within phnK at 4316.211 kb on + strand, within phnK at 4316.242 kb on + strand, within phnK at 4316.242 kb on + strand, within phnK at 4316.434 kb on + strand, within phnK at 4316.434 kb on + strand, within phnK at 4316.447 kb on - strand, within phnK at 4316.461 kb on - strand, within phnK at 4316.564 kb on + strand, within phnK at 4316.564 kb on + strand, within phnK at 4316.654 kb on - strand, within phnK at 4316.891 kb on - strand, within phnJ at 4316.929 kb on + strand, within phnJ at 4316.929 kb on + strand, within phnJ at 4316.930 kb on - strand, within phnJ at 4316.932 kb on + strand, within phnJ at 4317.020 kb on + strand, within phnJ at 4317.028 kb on - strand, within phnJ at 4317.034 kb on - strand, within phnJ at 4317.071 kb on + strand, within phnJ at 4317.095 kb on + strand, within phnJ at 4317.114 kb on + strand, within phnJ at 4317.114 kb on + strand, within phnJ at 4317.122 kb on - strand at 4317.154 kb on + strand, within phnJ at 4317.159 kb on + strand, within phnJ at 4317.168 kb on - strand, within phnJ at 4317.177 kb on + strand, within phnJ at 4317.177 kb on + strand, within phnJ at 4317.210 kb on - strand, within phnJ at 4317.215 kb on - strand, within phnJ at 4317.303 kb on + strand, within phnJ at 4317.340 kb on - strand, within phnJ at 4317.349 kb on + strand, within phnJ at 4317.394 kb on - strand, within phnJ at 4317.402 kb on - strand, within phnJ at 4317.428 kb on + strand, within phnJ at 4317.428 kb on + strand, within phnJ at 4317.481 kb on + strand, within phnJ at 4317.481 kb on + strand, within phnJ at 4317.620 kb on + strand at 4317.620 kb on + strand at 4317.631 kb on + strand at 4317.631 kb on + strand at 4317.634 kb on - strand at 4317.639 kb on - strand at 4317.658 kb on - strand at 4317.658 kb on - strand at 4317.686 kb on + strand at 4317.705 kb on + strand at 4317.708 kb on + strand at 4317.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 4,315,181 - -0.2 4,315,192 - -0.3 4,315,192 - -0.2 4,315,200 - -0.8 4,315,288 - -0.4 4,315,408 + phnL b4096 0.25 +0.5 4,315,507 + phnL b4096 0.40 -1.3 4,315,516 - phnL b4096 0.41 -0.2 4,315,516 - phnL b4096 0.41 +0.1 4,315,585 - phnL b4096 0.51 +0.2 4,315,585 - phnL b4096 0.51 -1.0 4,315,720 - phnL b4096 0.71 +0.4 4,315,740 + phnL b4096 0.74 -2.4 4,315,740 + phnL b4096 0.74 -0.1 4,315,751 + phnL b4096 0.75 +0.3 4,316,095 + +1.3 4,316,185 + phnK b4097 0.21 -0.3 4,316,185 + phnK b4097 0.21 -0.0 4,316,208 - phnK b4097 0.24 +0.4 4,316,211 + phnK b4097 0.24 -0.2 4,316,242 + phnK b4097 0.28 -0.2 4,316,242 + phnK b4097 0.28 +0.3 4,316,434 + phnK b4097 0.53 -0.0 4,316,434 + phnK b4097 0.53 +0.2 4,316,447 - phnK b4097 0.55 +1.1 4,316,461 - phnK b4097 0.57 +0.3 4,316,564 + phnK b4097 0.70 +0.4 4,316,564 + phnK b4097 0.70 -0.6 4,316,654 - phnK b4097 0.82 -0.2 4,316,891 - phnJ b4098 0.13 -0.2 4,316,929 + phnJ b4098 0.17 +0.1 4,316,929 + phnJ b4098 0.17 -2.1 4,316,930 - phnJ b4098 0.17 +0.1 4,316,932 + phnJ b4098 0.17 -1.0 4,317,020 + phnJ b4098 0.28 -0.1 4,317,028 - phnJ b4098 0.29 -0.7 4,317,034 - phnJ b4098 0.30 -0.3 4,317,071 + phnJ b4098 0.34 -1.0 4,317,095 + phnJ b4098 0.37 -0.1 4,317,114 + phnJ b4098 0.39 -0.5 4,317,114 + phnJ b4098 0.39 +0.1 4,317,122 - -0.3 4,317,154 + phnJ b4098 0.44 -0.3 4,317,159 + phnJ b4098 0.44 -0.4 4,317,168 - phnJ b4098 0.45 +0.0 4,317,177 + phnJ b4098 0.46 -0.1 4,317,177 + phnJ b4098 0.46 +0.6 4,317,210 - phnJ b4098 0.50 -0.3 4,317,215 - phnJ b4098 0.51 +0.0 4,317,303 + phnJ b4098 0.61 -0.5 4,317,340 - phnJ b4098 0.66 +0.3 4,317,349 + phnJ b4098 0.67 -1.3 4,317,394 - phnJ b4098 0.72 -0.6 4,317,402 - phnJ b4098 0.73 +0.4 4,317,428 + phnJ b4098 0.76 -0.2 4,317,428 + phnJ b4098 0.76 -0.3 4,317,481 + phnJ b4098 0.82 -0.6 4,317,481 + phnJ b4098 0.82 +0.0 4,317,620 + +0.3 4,317,620 + -0.3 4,317,631 + -0.5 4,317,631 + -0.2 4,317,634 - -0.0 4,317,639 - -0.1 4,317,658 - +0.1 4,317,658 - +0.5 4,317,686 + -0.3 4,317,705 + -0.2 4,317,708 + +0.4 4,317,708 + -0.1
Or see this region's nucleotide sequence