Strain Fitness in Escherichia coli BW25113 around b4307

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjhY and yjhP are separated by 126 nucleotidesyjhP and yjhQ are separated by 55 nucleotidesyjhQ and yjhX are separated by 11 nucleotidesyjhX and yjhZ are separated by 376 nucleotides b4656: yjhY - no description, at 4,530,073 to 4,530,333 yjhY b4306: yjhP - KpLE2 phage-like element; predicted methyltransferase (NCBI), at 4,530,460 to 4,531,206 yjhP b4307: yjhQ - KpLE2 phage-like element; predicted acetyltransferase (NCBI), at 4,531,262 to 4,531,807 yjhQ b4566: yjhX - hypothetical protein (NCBI), at 4,531,819 to 4,532,076 yjhX b4657: yjhZ - no description, at 4,532,453 to 4,532,698 yjhZ Position (kb) 4531 4532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4530.271 kb on + strand, within yjhYat 4530.273 kb on + strand, within yjhYat 4530.306 kb on + strand, within yjhYat 4530.306 kb on + strand, within yjhYat 4530.331 kb on + strandat 4530.341 kb on + strandat 4530.342 kb on + strandat 4530.482 kb on - strandat 4530.482 kb on - strandat 4530.553 kb on - strand, within yjhPat 4530.617 kb on + strand, within yjhPat 4530.644 kb on - strand, within yjhPat 4530.709 kb on + strand, within yjhPat 4530.773 kb on - strand, within yjhPat 4530.786 kb on - strand, within yjhPat 4530.806 kb on - strand, within yjhPat 4530.841 kb on - strand, within yjhPat 4530.977 kb on + strand, within yjhPat 4531.045 kb on - strand, within yjhPat 4531.057 kb on - strand, within yjhPat 4531.128 kb on + strand, within yjhPat 4531.128 kb on + strand, within yjhPat 4531.128 kb on - strand, within yjhPat 4531.152 kb on + strandat 4531.173 kb on - strandat 4531.196 kb on - strandat 4531.196 kb on - strandat 4531.265 kb on + strandat 4531.265 kb on + strandat 4531.288 kb on + strandat 4531.300 kb on + strandat 4531.317 kb on + strand, within yjhQat 4531.322 kb on + strand, within yjhQat 4531.356 kb on + strand, within yjhQat 4531.366 kb on + strand, within yjhQat 4531.366 kb on + strand, within yjhQat 4531.384 kb on - strand, within yjhQat 4531.385 kb on - strand, within yjhQat 4531.414 kb on + strand, within yjhQat 4531.414 kb on + strand, within yjhQat 4531.433 kb on + strand, within yjhQat 4531.433 kb on + strand, within yjhQat 4531.433 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.487 kb on - strand, within yjhQat 4531.492 kb on - strand, within yjhQat 4531.492 kb on - strand, within yjhQat 4531.512 kb on - strand, within yjhQat 4531.528 kb on + strand, within yjhQat 4531.558 kb on + strand, within yjhQat 4531.572 kb on + strand, within yjhQat 4531.687 kb on + strand, within yjhQat 4531.702 kb on + strand, within yjhQat 4531.754 kb on - strandat 4531.754 kb on - strandat 4531.755 kb on + strandat 4531.755 kb on + strandat 4531.801 kb on - strandat 4531.811 kb on - strandat 4531.871 kb on + strand, within yjhXat 4531.881 kb on + strand, within yjhXat 4531.940 kb on + strand, within yjhXat 4531.956 kb on + strand, within yjhXat 4531.956 kb on + strand, within yjhXat 4531.959 kb on + strand, within yjhXat 4531.959 kb on + strand, within yjhXat 4531.967 kb on - strand, within yjhXat 4531.967 kb on - strand, within yjhXat 4532.029 kb on - strand, within yjhXat 4532.029 kb on - strand, within yjhXat 4532.086 kb on + strandat 4532.089 kb on + strandat 4532.110 kb on + strandat 4532.118 kb on - strandat 4532.123 kb on - strandat 4532.123 kb on - strandat 4532.131 kb on - strandat 4532.161 kb on - strandat 4532.195 kb on + strandat 4532.207 kb on + strandat 4532.213 kb on + strandat 4532.225 kb on + strandat 4532.233 kb on - strandat 4532.233 kb on - strandat 4532.268 kb on + strandat 4532.268 kb on + strandat 4532.277 kb on - strandat 4532.277 kb on - strandat 4532.316 kb on + strandat 4532.329 kb on + strandat 4532.329 kb on + strandat 4532.348 kb on + strandat 4532.353 kb on + strandat 4532.356 kb on - strandat 4532.358 kb on + strandat 4532.367 kb on + strandat 4532.368 kb on + strandat 4532.376 kb on - strandat 4532.378 kb on + strandat 4532.380 kb on + strandat 4532.380 kb on + strandat 4532.383 kb on + strandat 4532.383 kb on + strandat 4532.435 kb on - strandat 4532.447 kb on - strandat 4532.452 kb on - strandat 4532.464 kb on - strandat 4532.530 kb on + strand, within yjhZat 4532.535 kb on + strand, within yjhZat 4532.535 kb on + strand, within yjhZat 4532.547 kb on + strand, within yjhZat 4532.547 kb on + strand, within yjhZat 4532.553 kb on - strand, within yjhZat 4532.568 kb on - strand, within yjhZat 4532.568 kb on - strand, within yjhZat 4532.568 kb on - strand, within yjhZat 4532.577 kb on - strand, within yjhZat 4532.582 kb on - strand, within yjhZat 4532.597 kb on + strand, within yjhZat 4532.603 kb on + strand, within yjhZat 4532.603 kb on + strand, within yjhZat 4532.604 kb on + strand, within yjhZat 4532.611 kb on + strand, within yjhZat 4532.611 kb on + strand, within yjhZat 4532.613 kb on + strand, within yjhZat 4532.613 kb on + strand, within yjhZat 4532.613 kb on + strand, within yjhZat 4532.613 kb on + strand, within yjhZat 4532.617 kb on + strand, within yjhZat 4532.618 kb on + strand, within yjhZat 4532.618 kb on + strand, within yjhZat 4532.621 kb on - strand, within yjhZat 4532.621 kb on - strand, within yjhZat 4532.622 kb on + strand, within yjhZat 4532.623 kb on + strand, within yjhZat 4532.625 kb on + strand, within yjhZat 4532.625 kb on - strand, within yjhZat 4532.625 kb on - strand, within yjhZat 4532.626 kb on + strand, within yjhZat 4532.626 kb on + strand, within yjhZat 4532.626 kb on + strand, within yjhZat 4532.629 kb on + strand, within yjhZat 4532.629 kb on + strand, within yjhZat 4532.629 kb on + strand, within yjhZat 4532.629 kb on + strand, within yjhZat 4532.630 kb on + strand, within yjhZat 4532.630 kb on + strand, within yjhZat 4532.630 kb on + strand, within yjhZat 4532.630 kb on + strand, within yjhZat 4532.631 kb on + strand, within yjhZat 4532.631 kb on + strand, within yjhZat 4532.631 kb on + strand, within yjhZat 4532.631 kb on + strand, within yjhZat 4532.633 kb on - strand, within yjhZat 4532.633 kb on - strand, within yjhZat 4532.635 kb on - strand, within yjhZat 4532.635 kb on - strand, within yjhZat 4532.635 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.637 kb on - strand, within yjhZat 4532.639 kb on - strand, within yjhZat 4532.642 kb on + strand, within yjhZat 4532.642 kb on + strand, within yjhZat 4532.648 kb on - strand, within yjhZat 4532.648 kb on - strand, within yjhZat 4532.648 kb on - strand, within yjhZat 4532.648 kb on - strand, within yjhZat 4532.710 kb on + strandat 4532.718 kb on - strandat 4532.728 kb on + strandat 4532.732 kb on + strandat 4532.732 kb on + strandat 4532.733 kb on + strandat 4532.733 kb on + strandat 4532.739 kb on - strandat 4532.740 kb on - strandat 4532.740 kb on - strandat 4532.741 kb on - strandat 4532.741 kb on - strandat 4532.746 kb on + strandat 4532.746 kb on + strandat 4532.749 kb on - strandat 4532.750 kb on - strandat 4532.750 kb on - strandat 4532.754 kb on - strandat 4532.760 kb on + strandat 4532.775 kb on + strandat 4532.783 kb on + strandat 4532.784 kb on + strandat 4532.784 kb on + strandat 4532.788 kb on + strandat 4532.792 kb on - strandat 4532.792 kb on - strandat 4532.792 kb on - strandat 4532.799 kb on + strandat 4532.803 kb on + strandat 4532.804 kb on - strandat 4532.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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4,530,271 + yjhY b4656 0.76 -0.4
4,530,273 + yjhY b4656 0.77 +0.1
4,530,306 + yjhY b4656 0.89 +0.7
4,530,306 + yjhY b4656 0.89 +0.0
4,530,331 + -1.9
4,530,341 + -0.5
4,530,342 + +0.4
4,530,482 - +0.3
4,530,482 - -0.1
4,530,553 - yjhP b4306 0.12 -0.4
4,530,617 + yjhP b4306 0.21 -0.3
4,530,644 - yjhP b4306 0.25 +0.2
4,530,709 + yjhP b4306 0.33 +0.5
4,530,773 - yjhP b4306 0.42 +0.2
4,530,786 - yjhP b4306 0.44 +0.4
4,530,806 - yjhP b4306 0.46 -0.7
4,530,841 - yjhP b4306 0.51 -0.5
4,530,977 + yjhP b4306 0.69 +0.5
4,531,045 - yjhP b4306 0.78 -0.3
4,531,057 - yjhP b4306 0.80 -0.2
4,531,128 + yjhP b4306 0.89 -0.6
4,531,128 + yjhP b4306 0.89 -0.6
4,531,128 - yjhP b4306 0.89 +0.2
4,531,152 + +0.3
4,531,173 - -0.7
4,531,196 - -0.2
4,531,196 - +0.1
4,531,265 + +0.6
4,531,265 + -1.2
4,531,288 + -0.4
4,531,300 + +1.0
4,531,317 + yjhQ b4307 0.10 -0.0
4,531,322 + yjhQ b4307 0.11 +0.5
4,531,356 + yjhQ b4307 0.17 +0.1
4,531,366 + yjhQ b4307 0.19 -0.1
4,531,366 + yjhQ b4307 0.19 -0.4
4,531,384 - yjhQ b4307 0.22 -1.3
4,531,385 - yjhQ b4307 0.23 +0.8
4,531,414 + yjhQ b4307 0.28 -0.5
4,531,414 + yjhQ b4307 0.28 -0.4
4,531,433 + yjhQ b4307 0.31 +0.2
4,531,433 + yjhQ b4307 0.31 -0.7
4,531,433 - yjhQ b4307 0.31 +0.3
4,531,487 - yjhQ b4307 0.41 -0.3
4,531,487 - yjhQ b4307 0.41 -0.3
4,531,487 - yjhQ b4307 0.41 +0.2
4,531,487 - yjhQ b4307 0.41 +0.4
4,531,492 - yjhQ b4307 0.42 -0.3
4,531,492 - yjhQ b4307 0.42 -0.4
4,531,512 - yjhQ b4307 0.46 -0.1
4,531,528 + yjhQ b4307 0.49 +0.4
4,531,558 + yjhQ b4307 0.54 -0.1
4,531,572 + yjhQ b4307 0.57 -0.9
4,531,687 + yjhQ b4307 0.78 +0.1
4,531,702 + yjhQ b4307 0.81 +0.2
4,531,754 - -1.3
4,531,754 - +1.7
4,531,755 + +0.1
4,531,755 + +0.0
4,531,801 - +0.2
4,531,811 - +0.2
4,531,871 + yjhX b4566 0.20 -0.1
4,531,881 + yjhX b4566 0.24 -0.5
4,531,940 + yjhX b4566 0.47 -0.2
4,531,956 + yjhX b4566 0.53 -0.1
4,531,956 + yjhX b4566 0.53 -0.4
4,531,959 + yjhX b4566 0.54 +0.1
4,531,959 + yjhX b4566 0.54 +0.5
4,531,967 - yjhX b4566 0.57 +0.2
4,531,967 - yjhX b4566 0.57 +0.5
4,532,029 - yjhX b4566 0.81 -0.3
4,532,029 - yjhX b4566 0.81 -0.4
4,532,086 + +0.3
4,532,089 + -0.2
4,532,110 + -0.3
4,532,118 - +0.4
4,532,123 - -0.1
4,532,123 - -0.5
4,532,131 - +0.8
4,532,161 - -0.4
4,532,195 + +0.3
4,532,207 + +0.4
4,532,213 + -0.1
4,532,225 + -0.1
4,532,233 - -0.2
4,532,233 - -0.2
4,532,268 + -1.4
4,532,268 + -0.5
4,532,277 - -0.1
4,532,277 - -0.7
4,532,316 + -1.3
4,532,329 + +0.1
4,532,329 + +1.7
4,532,348 + +0.3
4,532,353 + -0.3
4,532,356 - -0.9
4,532,358 + +0.5
4,532,367 + +0.4
4,532,368 + -1.0
4,532,376 - +0.1
4,532,378 + +0.7
4,532,380 + -0.2
4,532,380 + +0.2
4,532,383 + +0.4
4,532,383 + -0.6
4,532,435 - +0.7
4,532,447 - +1.2
4,532,452 - +1.2
4,532,464 - +0.1
4,532,530 + yjhZ b4657 0.31 -0.5
4,532,535 + yjhZ b4657 0.33 -0.8
4,532,535 + yjhZ b4657 0.33 +0.8
4,532,547 + yjhZ b4657 0.38 +0.6
4,532,547 + yjhZ b4657 0.38 +0.2
4,532,553 - yjhZ b4657 0.41 +1.0
4,532,568 - yjhZ b4657 0.47 +0.7
4,532,568 - yjhZ b4657 0.47 -0.8
4,532,568 - yjhZ b4657 0.47 +0.1
4,532,577 - yjhZ b4657 0.50 -0.4
4,532,582 - yjhZ b4657 0.52 -0.2
4,532,597 + yjhZ b4657 0.59 +0.4
4,532,603 + yjhZ b4657 0.61 +0.4
4,532,603 + yjhZ b4657 0.61 +0.1
4,532,604 + yjhZ b4657 0.61 +0.2
4,532,611 + yjhZ b4657 0.64 -0.5
4,532,611 + yjhZ b4657 0.64 -0.8
4,532,613 + yjhZ b4657 0.65 +0.8
4,532,613 + yjhZ b4657 0.65 +1.1
4,532,613 + yjhZ b4657 0.65 +0.2
4,532,613 + yjhZ b4657 0.65 +0.5
4,532,617 + yjhZ b4657 0.67 -0.1
4,532,618 + yjhZ b4657 0.67 +0.7
4,532,618 + yjhZ b4657 0.67 +0.6
4,532,621 - yjhZ b4657 0.68 -0.5
4,532,621 - yjhZ b4657 0.68 -1.2
4,532,622 + yjhZ b4657 0.69 -0.5
4,532,623 + yjhZ b4657 0.69 -1.0
4,532,625 + yjhZ b4657 0.70 +0.1
4,532,625 - yjhZ b4657 0.70 +0.4
4,532,625 - yjhZ b4657 0.70 -0.4
4,532,626 + yjhZ b4657 0.70 +0.5
4,532,626 + yjhZ b4657 0.70 +0.2
4,532,626 + yjhZ b4657 0.70 +0.1
4,532,629 + yjhZ b4657 0.72 +1.5
4,532,629 + yjhZ b4657 0.72 -0.4
4,532,629 + yjhZ b4657 0.72 +0.3
4,532,629 + yjhZ b4657 0.72 -1.0
4,532,630 + yjhZ b4657 0.72 -0.2
4,532,630 + yjhZ b4657 0.72 -0.0
4,532,630 + yjhZ b4657 0.72 +0.0
4,532,630 + yjhZ b4657 0.72 -0.1
4,532,631 + yjhZ b4657 0.72 -0.3
4,532,631 + yjhZ b4657 0.72 +0.5
4,532,631 + yjhZ b4657 0.72 +0.3
4,532,631 + yjhZ b4657 0.72 -1.2
4,532,633 - yjhZ b4657 0.73 -0.3
4,532,633 - yjhZ b4657 0.73 +0.1
4,532,635 - yjhZ b4657 0.74 +0.5
4,532,635 - yjhZ b4657 0.74 +1.3
4,532,635 - yjhZ b4657 0.74 -2.0
4,532,637 - yjhZ b4657 0.75 +0.6
4,532,637 - yjhZ b4657 0.75 +1.4
4,532,637 - yjhZ b4657 0.75 -1.3
4,532,637 - yjhZ b4657 0.75 -0.8
4,532,637 - yjhZ b4657 0.75 +1.6
4,532,637 - yjhZ b4657 0.75 +0.2
4,532,637 - yjhZ b4657 0.75 +0.7
4,532,637 - yjhZ b4657 0.75 +3.2
4,532,637 - yjhZ b4657 0.75 +1.0
4,532,639 - yjhZ b4657 0.76 -0.2
4,532,642 + yjhZ b4657 0.77 -1.2
4,532,642 + yjhZ b4657 0.77 +1.0
4,532,648 - yjhZ b4657 0.79 +0.3
4,532,648 - yjhZ b4657 0.79 +0.7
4,532,648 - yjhZ b4657 0.79 +1.1
4,532,648 - yjhZ b4657 0.79 -1.1
4,532,710 + -0.7
4,532,718 - -0.3
4,532,728 + +0.5
4,532,732 + +0.4
4,532,732 + +0.4
4,532,733 + -0.6
4,532,733 + -0.5
4,532,739 - -0.3
4,532,740 - -1.2
4,532,740 - -2.0
4,532,741 - -0.6
4,532,741 - -0.5
4,532,746 + +0.4
4,532,746 + -0.5
4,532,749 - -0.5
4,532,750 - +0.2
4,532,750 - -2.7
4,532,754 - -0.5
4,532,760 + -0.6
4,532,775 + +0.1
4,532,783 + -0.2
4,532,784 + +0.5
4,532,784 + +0.1
4,532,788 + +0.3
4,532,792 - +0.4
4,532,792 - +0.2
4,532,792 - +0.8
4,532,799 + +0.3
4,532,803 + +0.4
4,532,804 - -0.9
4,532,804 - -0.4

Or see this region's nucleotide sequence