Strain Fitness in Escherichia coli BW25113 around b4307
Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Laval1374 |
---|---|---|---|---|---|
remove | |||||
4,530,271 | + | yjhY | b4656 | 0.76 | -0.4 |
4,530,273 | + | yjhY | b4656 | 0.77 | +0.1 |
4,530,306 | + | yjhY | b4656 | 0.89 | +0.7 |
4,530,306 | + | yjhY | b4656 | 0.89 | +0.0 |
4,530,331 | + | -1.9 | |||
4,530,341 | + | -0.5 | |||
4,530,342 | + | +0.4 | |||
4,530,482 | - | +0.3 | |||
4,530,482 | - | -0.1 | |||
4,530,553 | - | yjhP | b4306 | 0.12 | -0.4 |
4,530,617 | + | yjhP | b4306 | 0.21 | -0.3 |
4,530,644 | - | yjhP | b4306 | 0.25 | +0.2 |
4,530,709 | + | yjhP | b4306 | 0.33 | +0.5 |
4,530,773 | - | yjhP | b4306 | 0.42 | +0.2 |
4,530,786 | - | yjhP | b4306 | 0.44 | +0.4 |
4,530,806 | - | yjhP | b4306 | 0.46 | -0.7 |
4,530,841 | - | yjhP | b4306 | 0.51 | -0.5 |
4,530,977 | + | yjhP | b4306 | 0.69 | +0.5 |
4,531,045 | - | yjhP | b4306 | 0.78 | -0.3 |
4,531,057 | - | yjhP | b4306 | 0.80 | -0.2 |
4,531,128 | + | yjhP | b4306 | 0.89 | -0.6 |
4,531,128 | + | yjhP | b4306 | 0.89 | -0.6 |
4,531,128 | - | yjhP | b4306 | 0.89 | +0.2 |
4,531,152 | + | +0.3 | |||
4,531,173 | - | -0.7 | |||
4,531,196 | - | -0.2 | |||
4,531,196 | - | +0.1 | |||
4,531,265 | + | +0.6 | |||
4,531,265 | + | -1.2 | |||
4,531,288 | + | -0.4 | |||
4,531,300 | + | +1.0 | |||
4,531,317 | + | yjhQ | b4307 | 0.10 | -0.0 |
4,531,322 | + | yjhQ | b4307 | 0.11 | +0.5 |
4,531,356 | + | yjhQ | b4307 | 0.17 | +0.1 |
4,531,366 | + | yjhQ | b4307 | 0.19 | -0.1 |
4,531,366 | + | yjhQ | b4307 | 0.19 | -0.4 |
4,531,384 | - | yjhQ | b4307 | 0.22 | -1.3 |
4,531,385 | - | yjhQ | b4307 | 0.23 | +0.8 |
4,531,414 | + | yjhQ | b4307 | 0.28 | -0.5 |
4,531,414 | + | yjhQ | b4307 | 0.28 | -0.4 |
4,531,433 | + | yjhQ | b4307 | 0.31 | +0.2 |
4,531,433 | + | yjhQ | b4307 | 0.31 | -0.7 |
4,531,433 | - | yjhQ | b4307 | 0.31 | +0.3 |
4,531,487 | - | yjhQ | b4307 | 0.41 | -0.3 |
4,531,487 | - | yjhQ | b4307 | 0.41 | -0.3 |
4,531,487 | - | yjhQ | b4307 | 0.41 | +0.2 |
4,531,487 | - | yjhQ | b4307 | 0.41 | +0.4 |
4,531,492 | - | yjhQ | b4307 | 0.42 | -0.3 |
4,531,492 | - | yjhQ | b4307 | 0.42 | -0.4 |
4,531,512 | - | yjhQ | b4307 | 0.46 | -0.1 |
4,531,528 | + | yjhQ | b4307 | 0.49 | +0.4 |
4,531,558 | + | yjhQ | b4307 | 0.54 | -0.1 |
4,531,572 | + | yjhQ | b4307 | 0.57 | -0.9 |
4,531,687 | + | yjhQ | b4307 | 0.78 | +0.1 |
4,531,702 | + | yjhQ | b4307 | 0.81 | +0.2 |
4,531,754 | - | -1.3 | |||
4,531,754 | - | +1.7 | |||
4,531,755 | + | +0.1 | |||
4,531,755 | + | +0.0 | |||
4,531,801 | - | +0.2 | |||
4,531,811 | - | +0.2 | |||
4,531,871 | + | yjhX | b4566 | 0.20 | -0.1 |
4,531,881 | + | yjhX | b4566 | 0.24 | -0.5 |
4,531,940 | + | yjhX | b4566 | 0.47 | -0.2 |
4,531,956 | + | yjhX | b4566 | 0.53 | -0.1 |
4,531,956 | + | yjhX | b4566 | 0.53 | -0.4 |
4,531,959 | + | yjhX | b4566 | 0.54 | +0.1 |
4,531,959 | + | yjhX | b4566 | 0.54 | +0.5 |
4,531,967 | - | yjhX | b4566 | 0.57 | +0.2 |
4,531,967 | - | yjhX | b4566 | 0.57 | +0.5 |
4,532,029 | - | yjhX | b4566 | 0.81 | -0.3 |
4,532,029 | - | yjhX | b4566 | 0.81 | -0.4 |
4,532,086 | + | +0.3 | |||
4,532,089 | + | -0.2 | |||
4,532,110 | + | -0.3 | |||
4,532,118 | - | +0.4 | |||
4,532,123 | - | -0.1 | |||
4,532,123 | - | -0.5 | |||
4,532,131 | - | +0.8 | |||
4,532,161 | - | -0.4 | |||
4,532,195 | + | +0.3 | |||
4,532,207 | + | +0.4 | |||
4,532,213 | + | -0.1 | |||
4,532,225 | + | -0.1 | |||
4,532,233 | - | -0.2 | |||
4,532,233 | - | -0.2 | |||
4,532,268 | + | -1.4 | |||
4,532,268 | + | -0.5 | |||
4,532,277 | - | -0.1 | |||
4,532,277 | - | -0.7 | |||
4,532,316 | + | -1.3 | |||
4,532,329 | + | +0.1 | |||
4,532,329 | + | +1.7 | |||
4,532,348 | + | +0.3 | |||
4,532,353 | + | -0.3 | |||
4,532,356 | - | -0.9 | |||
4,532,358 | + | +0.5 | |||
4,532,367 | + | +0.4 | |||
4,532,368 | + | -1.0 | |||
4,532,376 | - | +0.1 | |||
4,532,378 | + | +0.7 | |||
4,532,380 | + | -0.2 | |||
4,532,380 | + | +0.2 | |||
4,532,383 | + | +0.4 | |||
4,532,383 | + | -0.6 | |||
4,532,435 | - | +0.7 | |||
4,532,447 | - | +1.2 | |||
4,532,452 | - | +1.2 | |||
4,532,464 | - | +0.1 | |||
4,532,530 | + | yjhZ | b4657 | 0.31 | -0.5 |
4,532,535 | + | yjhZ | b4657 | 0.33 | -0.8 |
4,532,535 | + | yjhZ | b4657 | 0.33 | +0.8 |
4,532,547 | + | yjhZ | b4657 | 0.38 | +0.6 |
4,532,547 | + | yjhZ | b4657 | 0.38 | +0.2 |
4,532,553 | - | yjhZ | b4657 | 0.41 | +1.0 |
4,532,568 | - | yjhZ | b4657 | 0.47 | +0.7 |
4,532,568 | - | yjhZ | b4657 | 0.47 | -0.8 |
4,532,568 | - | yjhZ | b4657 | 0.47 | +0.1 |
4,532,577 | - | yjhZ | b4657 | 0.50 | -0.4 |
4,532,582 | - | yjhZ | b4657 | 0.52 | -0.2 |
4,532,597 | + | yjhZ | b4657 | 0.59 | +0.4 |
4,532,603 | + | yjhZ | b4657 | 0.61 | +0.4 |
4,532,603 | + | yjhZ | b4657 | 0.61 | +0.1 |
4,532,604 | + | yjhZ | b4657 | 0.61 | +0.2 |
4,532,611 | + | yjhZ | b4657 | 0.64 | -0.5 |
4,532,611 | + | yjhZ | b4657 | 0.64 | -0.8 |
4,532,613 | + | yjhZ | b4657 | 0.65 | +0.8 |
4,532,613 | + | yjhZ | b4657 | 0.65 | +1.1 |
4,532,613 | + | yjhZ | b4657 | 0.65 | +0.2 |
4,532,613 | + | yjhZ | b4657 | 0.65 | +0.5 |
4,532,617 | + | yjhZ | b4657 | 0.67 | -0.1 |
4,532,618 | + | yjhZ | b4657 | 0.67 | +0.7 |
4,532,618 | + | yjhZ | b4657 | 0.67 | +0.6 |
4,532,621 | - | yjhZ | b4657 | 0.68 | -0.5 |
4,532,621 | - | yjhZ | b4657 | 0.68 | -1.2 |
4,532,622 | + | yjhZ | b4657 | 0.69 | -0.5 |
4,532,623 | + | yjhZ | b4657 | 0.69 | -1.0 |
4,532,625 | + | yjhZ | b4657 | 0.70 | +0.1 |
4,532,625 | - | yjhZ | b4657 | 0.70 | +0.4 |
4,532,625 | - | yjhZ | b4657 | 0.70 | -0.4 |
4,532,626 | + | yjhZ | b4657 | 0.70 | +0.5 |
4,532,626 | + | yjhZ | b4657 | 0.70 | +0.2 |
4,532,626 | + | yjhZ | b4657 | 0.70 | +0.1 |
4,532,629 | + | yjhZ | b4657 | 0.72 | +1.5 |
4,532,629 | + | yjhZ | b4657 | 0.72 | -0.4 |
4,532,629 | + | yjhZ | b4657 | 0.72 | +0.3 |
4,532,629 | + | yjhZ | b4657 | 0.72 | -1.0 |
4,532,630 | + | yjhZ | b4657 | 0.72 | -0.2 |
4,532,630 | + | yjhZ | b4657 | 0.72 | -0.0 |
4,532,630 | + | yjhZ | b4657 | 0.72 | +0.0 |
4,532,630 | + | yjhZ | b4657 | 0.72 | -0.1 |
4,532,631 | + | yjhZ | b4657 | 0.72 | -0.3 |
4,532,631 | + | yjhZ | b4657 | 0.72 | +0.5 |
4,532,631 | + | yjhZ | b4657 | 0.72 | +0.3 |
4,532,631 | + | yjhZ | b4657 | 0.72 | -1.2 |
4,532,633 | - | yjhZ | b4657 | 0.73 | -0.3 |
4,532,633 | - | yjhZ | b4657 | 0.73 | +0.1 |
4,532,635 | - | yjhZ | b4657 | 0.74 | +0.5 |
4,532,635 | - | yjhZ | b4657 | 0.74 | +1.3 |
4,532,635 | - | yjhZ | b4657 | 0.74 | -2.0 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +0.6 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +1.4 |
4,532,637 | - | yjhZ | b4657 | 0.75 | -1.3 |
4,532,637 | - | yjhZ | b4657 | 0.75 | -0.8 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +1.6 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +0.2 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +0.7 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +3.2 |
4,532,637 | - | yjhZ | b4657 | 0.75 | +1.0 |
4,532,639 | - | yjhZ | b4657 | 0.76 | -0.2 |
4,532,642 | + | yjhZ | b4657 | 0.77 | -1.2 |
4,532,642 | + | yjhZ | b4657 | 0.77 | +1.0 |
4,532,648 | - | yjhZ | b4657 | 0.79 | +0.3 |
4,532,648 | - | yjhZ | b4657 | 0.79 | +0.7 |
4,532,648 | - | yjhZ | b4657 | 0.79 | +1.1 |
4,532,648 | - | yjhZ | b4657 | 0.79 | -1.1 |
4,532,710 | + | -0.7 | |||
4,532,718 | - | -0.3 | |||
4,532,728 | + | +0.5 | |||
4,532,732 | + | +0.4 | |||
4,532,732 | + | +0.4 | |||
4,532,733 | + | -0.6 | |||
4,532,733 | + | -0.5 | |||
4,532,739 | - | -0.3 | |||
4,532,740 | - | -1.2 | |||
4,532,740 | - | -2.0 | |||
4,532,741 | - | -0.6 | |||
4,532,741 | - | -0.5 | |||
4,532,746 | + | +0.4 | |||
4,532,746 | + | -0.5 | |||
4,532,749 | - | -0.5 | |||
4,532,750 | - | +0.2 | |||
4,532,750 | - | -2.7 | |||
4,532,754 | - | -0.5 | |||
4,532,760 | + | -0.6 | |||
4,532,775 | + | +0.1 | |||
4,532,783 | + | -0.2 | |||
4,532,784 | + | +0.5 | |||
4,532,784 | + | +0.1 | |||
4,532,788 | + | +0.3 | |||
4,532,792 | - | +0.4 | |||
4,532,792 | - | +0.2 | |||
4,532,792 | - | +0.8 | |||
4,532,799 | + | +0.3 | |||
4,532,803 | + | +0.4 | |||
4,532,804 | - | -0.9 | |||
4,532,804 | - | -0.4 |
Or see this region's nucleotide sequence