Strain Fitness in Escherichia coli BW25113 around b3284
Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Laval1374 |
---|---|---|---|---|---|
remove | |||||
3,429,403 | + | -0.5 | |||
3,429,447 | - | +0.4 | |||
3,429,489 | + | -0.4 | |||
3,429,489 | + | -0.5 | |||
3,429,489 | + | -0.1 | |||
3,429,530 | + | yrdD | b3283 | 0.16 | -0.4 |
3,429,530 | + | yrdD | b3283 | 0.16 | +0.1 |
3,429,532 | + | yrdD | b3283 | 0.17 | -0.1 |
3,429,597 | + | yrdD | b3283 | 0.29 | -0.8 |
3,429,598 | - | yrdD | b3283 | 0.29 | +0.3 |
3,429,598 | - | yrdD | b3283 | 0.29 | -0.4 |
3,429,607 | - | yrdD | b3283 | 0.30 | +0.3 |
3,429,623 | + | yrdD | b3283 | 0.33 | -0.7 |
3,429,634 | + | yrdD | b3283 | 0.35 | -0.7 |
3,429,634 | + | yrdD | b3283 | 0.35 | -0.2 |
3,429,642 | - | yrdD | b3283 | 0.37 | +0.2 |
3,429,642 | - | yrdD | b3283 | 0.37 | -0.8 |
3,429,642 | - | yrdD | b3283 | 0.37 | +0.2 |
3,429,642 | - | yrdD | b3283 | 0.37 | +0.1 |
3,429,642 | - | yrdD | b3283 | 0.37 | -0.9 |
3,429,643 | + | yrdD | b3283 | 0.37 | -0.1 |
3,429,643 | - | yrdD | b3283 | 0.37 | -0.3 |
3,429,651 | - | yrdD | b3283 | 0.38 | +0.1 |
3,429,653 | + | yrdD | b3283 | 0.39 | +0.1 |
3,429,653 | + | yrdD | b3283 | 0.39 | -1.5 |
3,429,726 | + | yrdD | b3283 | 0.52 | -3.1 |
3,429,742 | + | yrdD | b3283 | 0.55 | -0.8 |
3,429,750 | - | yrdD | b3283 | 0.57 | +0.5 |
3,429,750 | - | yrdD | b3283 | 0.57 | -0.6 |
3,429,765 | - | yrdD | b3283 | 0.59 | -0.7 |
3,429,785 | + | yrdD | b3283 | 0.63 | -0.3 |
3,429,786 | + | yrdD | b3283 | 0.63 | -1.0 |
3,429,794 | - | yrdD | b3283 | 0.65 | -0.6 |
3,429,794 | - | yrdD | b3283 | 0.65 | -0.1 |
3,429,805 | + | yrdD | b3283 | 0.67 | +0.3 |
3,429,863 | + | yrdD | b3283 | 0.78 | +0.1 |
3,429,888 | + | yrdD | b3283 | 0.82 | +0.4 |
3,429,891 | - | yrdD | b3283 | 0.83 | -0.0 |
3,429,924 | - | yrdD | b3283 | 0.89 | +0.1 |
3,429,933 | + | -0.8 | |||
3,429,946 | - | +0.2 | |||
3,429,956 | - | +0.1 | |||
3,429,956 | - | +0.2 | |||
3,429,958 | - | -0.1 | |||
3,429,959 | + | -0.2 | |||
3,429,959 | + | -0.1 | |||
3,429,960 | + | +0.3 | |||
3,429,960 | + | -0.2 | |||
3,429,967 | - | +0.1 | |||
3,429,970 | - | +0.1 | |||
3,429,972 | - | -0.5 | |||
3,429,972 | - | +0.5 | |||
3,429,977 | - | +0.1 | |||
3,429,996 | - | -0.2 | |||
3,429,996 | - | -0.2 | |||
3,430,016 | + | -0.7 | |||
3,430,021 | + | -1.0 | |||
3,430,024 | - | -0.5 | |||
3,430,025 | + | +1.4 | |||
3,430,084 | + | smg | b3284 | 0.15 | -0.4 |
3,430,086 | + | smg | b3284 | 0.15 | +0.0 |
3,430,113 | - | smg | b3284 | 0.21 | -0.1 |
3,430,136 | - | smg | b3284 | 0.26 | -0.7 |
3,430,136 | - | smg | b3284 | 0.26 | -0.3 |
3,430,137 | - | smg | b3284 | 0.26 | +0.5 |
3,430,148 | - | smg | b3284 | 0.28 | -0.2 |
3,430,205 | - | smg | b3284 | 0.41 | -0.7 |
3,430,247 | - | smg | b3284 | 0.49 | -0.8 |
3,430,249 | + | smg | b3284 | 0.50 | +0.4 |
3,430,249 | + | smg | b3284 | 0.50 | -0.5 |
3,430,266 | - | smg | b3284 | 0.53 | +0.3 |
3,430,272 | - | smg | b3284 | 0.55 | -0.0 |
3,430,283 | - | smg | b3284 | 0.57 | +0.1 |
3,430,289 | + | smg | b3284 | 0.58 | +0.6 |
3,430,362 | + | smg | b3284 | 0.74 | +0.5 |
3,430,362 | + | smg | b3284 | 0.74 | +0.3 |
3,430,372 | - | smg | b3284 | 0.76 | -0.2 |
3,430,415 | + | smg | b3284 | 0.85 | -0.1 |
3,430,423 | - | smg | b3284 | 0.86 | +0.3 |
3,430,432 | + | smg | b3284 | 0.88 | -1.6 |
3,430,432 | + | smg | b3284 | 0.88 | +0.2 |
3,430,432 | + | smg | b3284 | 0.88 | +0.1 |
3,430,481 | + | +0.6 | |||
3,430,490 | - | -0.2 | |||
3,430,491 | + | +0.4 | |||
3,430,512 | + | +0.6 | |||
3,430,513 | + | +1.2 | |||
3,430,515 | + | -0.4 | |||
3,430,518 | + | -0.2 | |||
3,430,518 | + | -0.2 | |||
3,430,523 | - | +0.6 | |||
3,430,523 | - | -0.1 | |||
3,430,525 | + | -0.5 | |||
3,430,531 | - | +1.0 | |||
3,430,548 | - | +0.1 | |||
3,430,568 | - | +0.1 | |||
3,430,568 | - | -0.1 | |||
3,430,570 | - | -0.7 | |||
3,430,583 | - | smf | b4473 | 0.11 | -0.5 |
3,430,590 | - | smf | b4473 | 0.12 | +0.4 |
3,430,595 | + | smf | b4473 | 0.12 | -0.9 |
3,430,595 | + | smf | b4473 | 0.12 | +0.3 |
3,430,602 | - | smf | b4473 | 0.13 | +0.1 |
3,430,616 | + | smf | b4473 | 0.14 | +0.1 |
3,430,616 | + | smf | b4473 | 0.14 | +0.6 |
3,430,616 | - | smf | b4473 | 0.14 | -0.4 |
3,430,637 | - | smf | b4473 | 0.16 | -0.0 |
3,430,671 | + | smf | b4473 | 0.19 | -0.7 |
3,430,793 | + | smf | b4473 | 0.30 | +1.1 |
3,430,801 | - | smf | b4473 | 0.30 | +0.1 |
3,430,815 | - | smf | b4473 | 0.32 | -0.0 |
3,430,828 | - | smf | b4473 | 0.33 | -0.6 |
3,430,828 | - | smf | b4473 | 0.33 | +1.0 |
3,430,871 | + | smf | b4473 | 0.37 | -0.0 |
3,430,876 | + | smf | b4473 | 0.37 | +0.4 |
3,430,876 | - | smf | b4473 | 0.37 | +0.3 |
3,430,881 | - | smf | b4473 | 0.38 | -1.1 |
3,430,891 | + | smf | b4473 | 0.38 | -0.8 |
3,430,891 | + | smf | b4473 | 0.38 | +0.3 |
3,430,921 | + | smf | b4473 | 0.41 | -1.3 |
3,430,921 | + | smf | b4473 | 0.41 | +0.5 |
3,430,927 | - | smf | b4473 | 0.42 | -0.3 |
3,430,944 | - | smf | b4473 | 0.43 | -0.1 |
3,430,944 | - | smf | b4473 | 0.43 | +0.2 |
3,430,980 | - | smf | b4473 | 0.46 | +0.3 |
3,430,984 | - | smf | b4473 | 0.47 | -0.0 |
3,431,013 | + | smf | b4473 | 0.49 | -0.3 |
3,431,017 | + | smf | b4473 | 0.50 | -1.5 |
3,431,018 | + | smf | b4473 | 0.50 | -0.1 |
3,431,065 | + | smf | b4473 | 0.54 | +0.2 |
3,431,073 | - | smf | b4473 | 0.55 | -0.1 |
3,431,079 | + | smf | b4473 | 0.55 | +0.1 |
3,431,126 | + | smf | b4473 | 0.59 | +0.1 |
3,431,134 | - | smf | b4473 | 0.60 | +1.7 |
3,431,134 | - | smf | b4473 | 0.60 | +1.7 |
3,431,221 | + | smf | b4473 | 0.68 | +1.2 |
3,431,373 | + | smf | b4473 | 0.81 | +0.3 |
3,431,376 | - | smf | b4473 | 0.82 | -0.6 |
3,431,415 | - | smf | b4473 | 0.85 | -0.7 |
3,431,415 | - | smf | b4473 | 0.85 | +0.5 |
3,431,448 | + | smf | b4473 | 0.88 | +1.1 |
3,431,448 | + | smf | b4473 | 0.88 | +0.5 |
3,431,455 | - | smf | b4473 | 0.89 | +0.3 |
3,431,455 | - | smf | b4473 | 0.89 | +0.7 |
3,431,468 | + | smf | b4473 | 0.90 | -0.4 |
3,431,474 | - | +0.6 | |||
3,431,482 | + | +0.5 |
Or see this region's nucleotide sequence