Strain Fitness in Escherichia coli BW25113 around b0591

Experiment: Laval1374

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfepD and ybdA are separated by 110 nucleotidesybdA and fepB are separated by 3 nucleotides b0590: fepD - iron-enterobactin transporter subunit (NCBI), at 620,408 to 621,412 fepD b0591: ybdA - predicted transporter (NCBI), at 621,523 to 622,773 ybdA b0592: fepB - iron-enterobactin transporter subunit (NCBI), at 622,777 to 623,733 fepB Position (kb) 621 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1at 620.634 kb on - strand, within fepDat 620.653 kb on - strand, within fepDat 620.653 kb on - strand, within fepDat 620.664 kb on - strand, within fepDat 620.672 kb on - strand, within fepDat 620.728 kb on - strand, within fepDat 620.749 kb on + strand, within fepDat 620.749 kb on + strand, within fepDat 620.749 kb on + strand, within fepDat 620.780 kb on - strand, within fepDat 620.808 kb on + strand, within fepDat 620.808 kb on + strand, within fepDat 620.892 kb on + strand, within fepDat 620.900 kb on - strand, within fepDat 620.964 kb on - strand, within fepDat 620.964 kb on - strand, within fepDat 620.970 kb on + strand, within fepDat 620.970 kb on + strand, within fepDat 621.018 kb on - strand, within fepDat 621.228 kb on - strand, within fepDat 621.295 kb on - strand, within fepDat 621.295 kb on - strand, within fepDat 621.331 kb on + strandat 621.474 kb on - strandat 621.474 kb on - strandat 621.487 kb on - strandat 621.608 kb on + strandat 621.654 kb on - strand, within ybdAat 621.727 kb on - strand, within ybdAat 621.819 kb on + strand, within ybdAat 621.846 kb on + strand, within ybdAat 621.846 kb on + strand, within ybdAat 621.966 kb on + strand, within ybdAat 622.236 kb on + strand, within ybdAat 622.246 kb on + strand, within ybdAat 622.255 kb on - strand, within ybdAat 622.255 kb on - strand, within ybdAat 622.365 kb on + strand, within ybdAat 622.365 kb on + strand, within ybdAat 622.409 kb on - strand, within ybdAat 622.434 kb on + strand, within ybdAat 622.441 kb on - strand, within ybdAat 622.441 kb on - strand, within ybdAat 622.472 kb on + strand, within ybdAat 622.472 kb on + strand, within ybdAat 622.491 kb on + strand, within ybdAat 622.596 kb on + strand, within ybdAat 622.596 kb on + strand, within ybdAat 622.611 kb on - strand, within ybdAat 622.611 kb on - strand, within ybdAat 622.615 kb on + strand, within ybdAat 622.615 kb on + strand, within ybdAat 622.801 kb on - strandat 622.819 kb on + strandat 622.819 kb on + strandat 622.847 kb on - strandat 622.875 kb on + strand, within fepBat 622.875 kb on + strand, within fepBat 622.899 kb on + strand, within fepBat 622.917 kb on + strand, within fepBat 622.923 kb on + strand, within fepBat 622.958 kb on + strand, within fepBat 623.019 kb on + strand, within fepBat 623.019 kb on + strand, within fepBat 623.028 kb on - strand, within fepBat 623.028 kb on - strand, within fepBat 623.032 kb on + strand, within fepBat 623.119 kb on + strand, within fepBat 623.140 kb on - strand, within fepBat 623.148 kb on - strand, within fepBat 623.148 kb on - strand, within fepBat 623.199 kb on - strand, within fepBat 623.253 kb on - strand, within fepBat 623.341 kb on - strand, within fepBat 623.405 kb on - strand, within fepBat 623.405 kb on - strand, within fepBat 623.426 kb on + strand, within fepBat 623.426 kb on + strand, within fepBat 623.458 kb on - strand, within fepBat 623.458 kb on - strand, within fepBat 623.467 kb on - strand, within fepBat 623.467 kb on - strand, within fepBat 623.470 kb on - strand, within fepBat 623.470 kb on - strand, within fepBat 623.563 kb on + strand, within fepBat 623.576 kb on - strand, within fepBat 623.576 kb on - strand, within fepBat 623.591 kb on - strand, within fepBat 623.591 kb on - strand, within fepBat 623.610 kb on + strand, within fepBat 623.672 kb on + strandat 623.708 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
remove
620,634 - fepD b0590 0.22 -1.7
620,653 - fepD b0590 0.24 -1.1
620,653 - fepD b0590 0.24 -1.5
620,664 - fepD b0590 0.25 -0.2
620,672 - fepD b0590 0.26 -1.9
620,728 - fepD b0590 0.32 -1.1
620,749 + fepD b0590 0.34 -2.6
620,749 + fepD b0590 0.34 -0.7
620,749 + fepD b0590 0.34 -1.3
620,780 - fepD b0590 0.37 -0.9
620,808 + fepD b0590 0.40 -0.4
620,808 + fepD b0590 0.40 -0.7
620,892 + fepD b0590 0.48 -1.7
620,900 - fepD b0590 0.49 -1.1
620,964 - fepD b0590 0.55 -2.4
620,964 - fepD b0590 0.55 -0.8
620,970 + fepD b0590 0.56 -2.6
620,970 + fepD b0590 0.56 -2.1
621,018 - fepD b0590 0.61 -2.9
621,228 - fepD b0590 0.82 -1.7
621,295 - fepD b0590 0.88 -1.6
621,295 - fepD b0590 0.88 -0.7
621,331 + -0.5
621,474 - +0.6
621,474 - +0.7
621,487 - -0.4
621,608 + -0.6
621,654 - ybdA b0591 0.10 -0.9
621,727 - ybdA b0591 0.16 -1.4
621,819 + ybdA b0591 0.24 -0.1
621,846 + ybdA b0591 0.26 +0.1
621,846 + ybdA b0591 0.26 -1.5
621,966 + ybdA b0591 0.35 -0.4
622,236 + ybdA b0591 0.57 -0.4
622,246 + ybdA b0591 0.58 +0.0
622,255 - ybdA b0591 0.59 -0.9
622,255 - ybdA b0591 0.59 -1.2
622,365 + ybdA b0591 0.67 -0.7
622,365 + ybdA b0591 0.67 -0.5
622,409 - ybdA b0591 0.71 -0.8
622,434 + ybdA b0591 0.73 -0.1
622,441 - ybdA b0591 0.73 -0.7
622,441 - ybdA b0591 0.73 +0.5
622,472 + ybdA b0591 0.76 -0.3
622,472 + ybdA b0591 0.76 -0.3
622,491 + ybdA b0591 0.77 -0.4
622,596 + ybdA b0591 0.86 +0.1
622,596 + ybdA b0591 0.86 -0.4
622,611 - ybdA b0591 0.87 -0.3
622,611 - ybdA b0591 0.87 -0.7
622,615 + ybdA b0591 0.87 -0.3
622,615 + ybdA b0591 0.87 -0.9
622,801 - +0.6
622,819 + -1.2
622,819 + -0.7
622,847 - -1.4
622,875 + fepB b0592 0.10 +0.6
622,875 + fepB b0592 0.10 -0.7
622,899 + fepB b0592 0.13 -2.1
622,917 + fepB b0592 0.15 -1.9
622,923 + fepB b0592 0.15 -0.4
622,958 + fepB b0592 0.19 -0.9
623,019 + fepB b0592 0.25 -0.9
623,019 + fepB b0592 0.25 -0.6
623,028 - fepB b0592 0.26 -1.5
623,028 - fepB b0592 0.26 -1.3
623,032 + fepB b0592 0.27 -1.9
623,119 + fepB b0592 0.36 -0.7
623,140 - fepB b0592 0.38 -0.9
623,148 - fepB b0592 0.39 -1.8
623,148 - fepB b0592 0.39 -1.0
623,199 - fepB b0592 0.44 -1.1
623,253 - fepB b0592 0.50 -1.4
623,341 - fepB b0592 0.59 +0.2
623,405 - fepB b0592 0.66 -1.6
623,405 - fepB b0592 0.66 -1.4
623,426 + fepB b0592 0.68 -0.6
623,426 + fepB b0592 0.68 -1.0
623,458 - fepB b0592 0.71 -1.1
623,458 - fepB b0592 0.71 -0.2
623,467 - fepB b0592 0.72 -0.9
623,467 - fepB b0592 0.72 -0.4
623,470 - fepB b0592 0.72 -1.9
623,470 - fepB b0592 0.72 -0.7
623,563 + fepB b0592 0.82 -0.8
623,576 - fepB b0592 0.83 -1.6
623,576 - fepB b0592 0.83 -0.4
623,591 - fepB b0592 0.85 -0.4
623,591 - fepB b0592 0.85 -1.1
623,610 + fepB b0592 0.87 -1.9
623,672 + -1.6
623,708 + +0.2

Or see this region's nucleotide sequence