Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaA and nhaR are separated by 59 nucleotides nhaR and insB-1 are separated by 190 nucleotides insB-1 and insA-1 overlap by 82 nucleotides
b0019: nhaA - pH-dependent sodium/proton antiporter (NCBI), at 17,489 to 18,655
nhaA
b0020: nhaR - DNA-binding transcriptional activator (NCBI), at 18,715 to 19,620
nhaR
b0021: insB-1 - IS1 transposase InsAB' (NCBI), at 19,811 to 20,314
insB-1
b0022: insA-1 - IS1 repressor protein InsA (NCBI), at 20,233 to 20,508
insA-1
Position (kb) 18
19
20 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 17.749 kb on - strand, within nhaA at 17.749 kb on - strand, within nhaA at 17.765 kb on - strand, within nhaA at 17.765 kb on - strand, within nhaA at 17.813 kb on + strand, within nhaA at 17.879 kb on + strand, within nhaA at 17.887 kb on - strand, within nhaA at 17.902 kb on - strand, within nhaA at 17.904 kb on + strand, within nhaA at 17.917 kb on + strand, within nhaA at 17.925 kb on - strand, within nhaA at 17.925 kb on - strand, within nhaA at 17.925 kb on - strand, within nhaA at 17.990 kb on + strand, within nhaA at 17.990 kb on + strand, within nhaA at 18.015 kb on - strand, within nhaA at 18.041 kb on - strand, within nhaA at 18.044 kb on - strand, within nhaA at 18.044 kb on - strand, within nhaA at 18.044 kb on - strand, within nhaA at 18.085 kb on + strand, within nhaA at 18.085 kb on + strand, within nhaA at 18.095 kb on - strand, within nhaA at 18.097 kb on - strand at 18.097 kb on - strand, within nhaA at 18.098 kb on - strand, within nhaA at 18.098 kb on - strand, within nhaA at 18.128 kb on + strand, within nhaA at 18.167 kb on + strand, within nhaA at 18.201 kb on - strand, within nhaA at 18.244 kb on - strand, within nhaA at 18.245 kb on + strand, within nhaA at 18.329 kb on - strand, within nhaA at 18.353 kb on - strand, within nhaA at 18.353 kb on - strand, within nhaA at 18.480 kb on + strand, within nhaA at 18.488 kb on - strand, within nhaA at 18.501 kb on + strand, within nhaA at 18.501 kb on + strand, within nhaA at 18.557 kb on - strand at 18.557 kb on - strand at 18.559 kb on + strand at 18.567 kb on - strand at 18.567 kb on - strand at 18.576 kb on + strand at 18.591 kb on + strand at 18.591 kb on + strand at 18.596 kb on + strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.753 kb on - strand at 18.765 kb on + strand at 18.809 kb on - strand, within nhaR at 18.809 kb on - strand, within nhaR at 18.842 kb on - strand, within nhaR at 18.852 kb on - strand, within nhaR at 18.852 kb on - strand, within nhaR at 18.852 kb on - strand, within nhaR at 18.898 kb on - strand, within nhaR at 18.917 kb on - strand, within nhaR at 18.917 kb on - strand, within nhaR at 19.027 kb on + strand, within nhaR at 19.036 kb on + strand, within nhaR at 19.066 kb on + strand, within nhaR at 19.068 kb on + strand, within nhaR at 19.068 kb on + strand, within nhaR at 19.074 kb on - strand, within nhaR at 19.105 kb on - strand, within nhaR at 19.148 kb on - strand, within nhaR at 19.194 kb on - strand, within nhaR at 19.241 kb on + strand, within nhaR at 19.244 kb on - strand, within nhaR at 19.244 kb on - strand, within nhaR at 19.275 kb on - strand, within nhaR at 19.319 kb on - strand, within nhaR at 19.326 kb on - strand, within nhaR at 19.326 kb on - strand, within nhaR at 19.425 kb on - strand, within nhaR at 19.457 kb on - strand, within nhaR at 19.464 kb on + strand, within nhaR at 19.483 kb on - strand, within nhaR at 19.510 kb on + strand, within nhaR at 19.516 kb on + strand, within nhaR at 19.516 kb on + strand, within nhaR at 19.524 kb on - strand, within nhaR at 19.549 kb on + strand at 19.549 kb on + strand at 19.549 kb on + strand at 19.619 kb on + strand at 19.644 kb on + strand at 19.669 kb on - strand at 19.723 kb on + strand at 19.723 kb on + strand at 19.723 kb on - strand at 20.506 kb on + strand at 20.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 17,749 - nhaA b0019 0.22 -3.4 17,749 - nhaA b0019 0.22 -3.0 17,765 - nhaA b0019 0.24 -3.5 17,765 - nhaA b0019 0.24 -2.2 17,813 + nhaA b0019 0.28 -4.3 17,879 + nhaA b0019 0.33 -3.3 17,887 - nhaA b0019 0.34 -3.7 17,902 - nhaA b0019 0.35 -3.6 17,904 + nhaA b0019 0.36 +0.3 17,917 + nhaA b0019 0.37 -3.2 17,925 - nhaA b0019 0.37 -3.9 17,925 - nhaA b0019 0.37 -3.2 17,925 - nhaA b0019 0.37 -3.0 17,990 + nhaA b0019 0.43 -3.8 17,990 + nhaA b0019 0.43 -3.1 18,015 - nhaA b0019 0.45 -4.1 18,041 - nhaA b0019 0.47 -3.8 18,044 - nhaA b0019 0.48 -3.0 18,044 - nhaA b0019 0.48 -2.5 18,044 - nhaA b0019 0.48 -4.0 18,085 + nhaA b0019 0.51 -4.5 18,085 + nhaA b0019 0.51 -1.9 18,095 - nhaA b0019 0.52 -3.3 18,097 - -1.2 18,097 - nhaA b0019 0.52 -1.9 18,098 - nhaA b0019 0.52 -2.8 18,098 - nhaA b0019 0.52 -3.1 18,128 + nhaA b0019 0.55 -3.4 18,167 + nhaA b0019 0.58 -2.1 18,201 - nhaA b0019 0.61 -0.4 18,244 - nhaA b0019 0.65 -2.4 18,245 + nhaA b0019 0.65 -3.3 18,329 - nhaA b0019 0.72 -3.1 18,353 - nhaA b0019 0.74 -2.7 18,353 - nhaA b0019 0.74 -2.4 18,480 + nhaA b0019 0.85 -4.1 18,488 - nhaA b0019 0.86 -4.0 18,501 + nhaA b0019 0.87 -4.5 18,501 + nhaA b0019 0.87 -3.4 18,557 - -1.0 18,557 - -1.6 18,559 + -4.2 18,567 - -1.0 18,567 - -3.1 18,576 + -1.4 18,591 + -4.8 18,591 + -4.8 18,596 + -3.3 18,619 - -1.9 18,619 - -3.8 18,619 - -2.8 18,753 - -0.5 18,765 + -1.7 18,809 - nhaR b0020 0.10 -1.0 18,809 - nhaR b0020 0.10 +0.2 18,842 - nhaR b0020 0.14 -0.5 18,852 - nhaR b0020 0.15 -0.3 18,852 - nhaR b0020 0.15 -1.3 18,852 - nhaR b0020 0.15 -0.8 18,898 - nhaR b0020 0.20 -0.5 18,917 - nhaR b0020 0.22 -0.7 18,917 - nhaR b0020 0.22 -1.2 19,027 + nhaR b0020 0.34 -2.0 19,036 + nhaR b0020 0.35 -1.2 19,066 + nhaR b0020 0.39 -0.1 19,068 + nhaR b0020 0.39 -0.2 19,068 + nhaR b0020 0.39 -0.8 19,074 - nhaR b0020 0.40 -1.5 19,105 - nhaR b0020 0.43 -3.1 19,148 - nhaR b0020 0.48 +0.1 19,194 - nhaR b0020 0.53 -0.8 19,241 + nhaR b0020 0.58 -1.3 19,244 - nhaR b0020 0.58 -0.8 19,244 - nhaR b0020 0.58 -0.5 19,275 - nhaR b0020 0.62 -0.8 19,319 - nhaR b0020 0.67 -0.6 19,326 - nhaR b0020 0.67 -0.8 19,326 - nhaR b0020 0.67 -0.8 19,425 - nhaR b0020 0.78 -0.5 19,457 - nhaR b0020 0.82 -0.4 19,464 + nhaR b0020 0.83 -1.2 19,483 - nhaR b0020 0.85 -0.4 19,510 + nhaR b0020 0.88 +0.6 19,516 + nhaR b0020 0.88 -0.5 19,516 + nhaR b0020 0.88 -0.1 19,524 - nhaR b0020 0.89 -1.2 19,549 + -2.0 19,549 + -1.7 19,549 + -1.4 19,619 + -1.0 19,644 + +1.1 19,669 - -0.1 19,723 + +1.1 19,723 + -0.5 19,723 - -1.6 20,506 + -0.4 20,574 - -0.3
Or see this region's nucleotide sequence