Experiment: TN_15CS_warm37C_5dbl_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galT and galE are separated by 9 nucleotides galE and modF are separated by 260 nucleotides
b0758: galT - galactose-1-phosphate uridylyltransferase (NCBI), at 789,206 to 790,252
galT
b0759: galE - UDP-galactose-4-epimerase (VIMSS), at 790,262 to 791,278
galE
b0760: modF - fused molybdate transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 791,539 to 793,011
modF
Position (kb) 790
791
792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 789.338 kb on - strand, within galT at 789.338 kb on - strand, within galT at 789.425 kb on - strand, within galT at 789.425 kb on - strand at 789.433 kb on - strand, within galT at 789.581 kb on - strand, within galT at 789.661 kb on + strand, within galT at 789.712 kb on - strand, within galT at 789.712 kb on - strand, within galT at 789.774 kb on - strand, within galT at 789.811 kb on + strand, within galT at 789.908 kb on + strand, within galT at 790.161 kb on - strand at 790.244 kb on - strand at 790.244 kb on - strand at 790.244 kb on - strand at 790.264 kb on + strand at 790.264 kb on + strand at 790.298 kb on + strand at 790.385 kb on + strand, within galE at 790.385 kb on + strand, within galE at 790.393 kb on + strand, within galE at 790.499 kb on + strand, within galE at 790.499 kb on + strand, within galE at 790.508 kb on - strand, within galE at 790.541 kb on + strand, within galE at 790.604 kb on - strand, within galE at 790.604 kb on - strand, within galE at 790.658 kb on + strand, within galE at 790.658 kb on + strand, within galE at 790.668 kb on + strand, within galE at 790.719 kb on + strand, within galE at 790.759 kb on + strand, within galE at 790.950 kb on + strand, within galE at 790.950 kb on + strand, within galE at 791.027 kb on + strand, within galE at 791.027 kb on + strand, within galE at 791.152 kb on - strand, within galE at 791.174 kb on - strand, within galE at 791.293 kb on + strand at 791.293 kb on + strand at 791.565 kb on + strand at 791.603 kb on + strand at 791.684 kb on - strand at 791.684 kb on - strand at 791.727 kb on - strand, within modF at 791.783 kb on - strand, within modF at 791.798 kb on + strand, within modF at 791.798 kb on + strand, within modF at 791.808 kb on + strand, within modF at 791.810 kb on + strand, within modF at 791.818 kb on - strand, within modF at 791.829 kb on - strand, within modF at 791.942 kb on + strand, within modF at 792.075 kb on - strand, within modF at 792.076 kb on - strand, within modF at 792.228 kb on - strand, within modF
Per-strain Table
Position Strand Gene LocusTag Fraction TN_15CS_warm37C_5dbl_rep2 remove 789,338 - galT b0758 0.13 -0.9 789,338 - galT b0758 0.13 -2.0 789,425 - galT b0758 0.21 -2.8 789,425 - -1.5 789,433 - galT b0758 0.22 -1.7 789,581 - galT b0758 0.36 -1.4 789,661 + galT b0758 0.43 -0.6 789,712 - galT b0758 0.48 -1.2 789,712 - galT b0758 0.48 -3.0 789,774 - galT b0758 0.54 -0.9 789,811 + galT b0758 0.58 -0.1 789,908 + galT b0758 0.67 +0.2 790,161 - -0.3 790,244 - +0.1 790,244 - -0.1 790,244 - +0.8 790,264 + +0.3 790,264 + -1.3 790,298 + -2.2 790,385 + galE b0759 0.12 -2.5 790,385 + galE b0759 0.12 -1.3 790,393 + galE b0759 0.13 -1.3 790,499 + galE b0759 0.23 -1.4 790,499 + galE b0759 0.23 -2.3 790,508 - galE b0759 0.24 -3.4 790,541 + galE b0759 0.27 -2.7 790,604 - galE b0759 0.34 -4.2 790,604 - galE b0759 0.34 -3.1 790,658 + galE b0759 0.39 -1.3 790,658 + galE b0759 0.39 -2.0 790,668 + galE b0759 0.40 -2.7 790,719 + galE b0759 0.45 -4.4 790,759 + galE b0759 0.49 -2.0 790,950 + galE b0759 0.68 -0.9 790,950 + galE b0759 0.68 -2.0 791,027 + galE b0759 0.75 -1.1 791,027 + galE b0759 0.75 -0.7 791,152 - galE b0759 0.88 -3.9 791,174 - galE b0759 0.90 -4.3 791,293 + +0.7 791,293 + +0.5 791,565 + -0.2 791,603 + -0.3 791,684 - +0.2 791,684 - -0.0 791,727 - modF b0760 0.13 +0.0 791,783 - modF b0760 0.17 +0.2 791,798 + modF b0760 0.18 -0.2 791,798 + modF b0760 0.18 +1.7 791,808 + modF b0760 0.18 +0.5 791,810 + modF b0760 0.18 -0.6 791,818 - modF b0760 0.19 -1.7 791,829 - modF b0760 0.20 -0.4 791,942 + modF b0760 0.27 +0.1 792,075 - modF b0760 0.36 -0.1 792,076 - modF b0760 0.36 -0.4 792,228 - modF b0760 0.47 -0.4
Or see this region's nucleotide sequence