Strain Fitness in Escherichia coli BW25113 around b3289

Experiment: TN_15CS_15C_5dbl_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TN_15CS_15C_5dbl_rep2
3,432,238	+				+0.0
3,433,170	+				+0.3
3,433,177	+				-0.2
3,433,178	+				+0.4
3,433,186	-				+0.0
3,433,186	-				+0.6
3,433,193	+				+0.9
3,433,193	+				+0.1
3,433,218	+				+0.3
3,433,260	-				-1.4
3,433,293	+				+0.1
3,433,374	+	rsmB	b3289	0.11	+0.2
3,433,374	+	rsmB	b3289	0.11	-0.9
3,433,374	+	rsmB	b3289	0.11	+0.0
3,433,379	-	rsmB	b3289	0.12	-0.7
3,433,384	-	rsmB	b3289	0.12	-1.2
3,433,392	-	rsmB	b3289	0.13	+0.4
3,433,393	+	rsmB	b3289	0.13	-0.9
3,433,397	+	rsmB	b3289	0.13	-0.0
3,433,397	+	rsmB	b3289	0.13	+0.2
3,433,397	+	rsmB	b3289	0.13	-0.7
3,433,397	+	rsmB	b3289	0.13	-1.2
3,433,397	+	rsmB	b3289	0.13	+0.1
3,433,397	+	rsmB	b3289	0.13	-0.2
3,433,421	-	rsmB	b3289	0.15	-3.0
3,433,421	-	rsmB	b3289	0.15	-1.3
3,433,440	-	rsmB	b3289	0.16	-0.8
3,433,447	+	rsmB	b3289	0.17	-0.0
3,433,464	+	rsmB	b3289	0.18	-0.6
3,433,466	-	rsmB	b3289	0.18	-0.3
3,433,472	-	rsmB	b3289	0.19	-0.4
3,433,497	+	rsmB	b3289	0.21	-0.3
3,433,504	+	rsmB	b3289	0.21	+0.0
3,433,511	-	rsmB	b3289	0.22	-1.7
3,433,518	-	rsmB	b3289	0.22	-0.0
3,433,523	-	rsmB	b3289	0.23	+0.0
3,433,523	-	rsmB	b3289	0.23	-0.3
3,433,525	+	rsmB	b3289	0.23	+0.2
3,433,525	+	rsmB	b3289	0.23	+0.5
3,433,567	+	rsmB	b3289	0.26	-0.7
3,433,589	+	rsmB	b3289	0.28	+0.0
3,433,629	-	rsmB	b3289	0.31	-1.1
3,433,665	+	rsmB	b3289	0.34	-0.8
3,433,665	+	rsmB	b3289	0.34	+0.8
3,433,665	+	rsmB	b3289	0.34	-0.5
3,433,671	-	rsmB	b3289	0.34	+0.2
3,433,671	-	rsmB	b3289	0.34	-1.3
3,433,673	-	rsmB	b3289	0.34	-2.6
3,433,698	+	rsmB	b3289	0.36	+0.2
3,433,706	-	rsmB	b3289	0.37	-1.7
3,433,706	-	rsmB	b3289	0.37	-1.2
3,433,706	-	rsmB	b3289	0.37	-0.3
3,433,758	+	rsmB	b3289	0.41	-2.6
3,433,837	+	rsmB	b3289	0.47	+0.1
3,433,843	+	rsmB	b3289	0.48	-0.8
3,433,843	+	rsmB	b3289	0.48	-0.5
3,433,845	-	rsmB	b3289	0.48	-0.3
3,433,845	-	rsmB	b3289	0.48	-3.0
3,433,851	+	rsmB	b3289	0.48	-0.6
3,433,859	-	rsmB	b3289	0.49	-1.5
3,433,864	-	rsmB	b3289	0.49	+0.4
3,433,864	-	rsmB	b3289	0.49	-0.9
3,433,864	-	rsmB	b3289	0.49	-0.8
3,433,877	+	rsmB	b3289	0.50	+0.3
3,433,936	+	rsmB	b3289	0.55	-0.2
3,433,939	-	rsmB	b3289	0.55	-1.9
3,433,944	-	rsmB	b3289	0.55	-0.6
3,433,953	-	rsmB	b3289	0.56	-1.0
3,434,019	+	rsmB	b3289	0.61	+0.4
3,434,027	-	rsmB	b3289	0.62	-0.6
3,434,036	+	rsmB	b3289	0.63	-0.9
3,434,071	-	rsmB	b3289	0.65	-0.8
3,434,071	-	rsmB	b3289	0.65	+0.9
3,434,112	-	rsmB	b3289	0.68	+0.6
3,434,134	-				-1.2
3,434,141	-	rsmB	b3289	0.71	-0.2
3,434,141	-	rsmB	b3289	0.71	-1.1
3,434,147	-	rsmB	b3289	0.71	+0.0
3,434,147	-	rsmB	b3289	0.71	-0.2
3,434,150	+	rsmB	b3289	0.71	-0.3
3,434,158	-	rsmB	b3289	0.72	-1.1
3,434,333	+	rsmB	b3289	0.86	-0.7
3,434,339	-	rsmB	b3289	0.86	+0.5
3,434,350	-	rsmB	b3289	0.87	+0.8
3,434,350	-	rsmB	b3289	0.87	-0.7
3,434,352	+	rsmB	b3289	0.87	-0.5
3,434,357	+	rsmB	b3289	0.87	-0.7
3,434,366	+	rsmB	b3289	0.88	-1.6
3,434,370	+	rsmB	b3289	0.88	-0.2
3,434,402	+				-0.1
3,434,430	+				-0.5
3,434,430	+				-0.1
3,434,432	+				+0.1
3,434,432	+				+0.0
3,434,433	+				-0.6
3,434,433	+				-0.6
3,434,471	+				-0.1
3,434,477	-				+0.1
3,434,477	-				-0.1
3,434,504	-				+0.0
3,434,504	-				-3.0
3,434,673	+				-0.7
3,434,812	-	trkA	b3290	0.20	-0.4
3,434,850	+	trkA	b3290	0.23	+0.0
3,434,913	-	trkA	b3290	0.27	+0.0
3,434,918	-	trkA	b3290	0.27	-1.2
3,434,955	-	trkA	b3290	0.30	+0.0
3,434,955	-	trkA	b3290	0.30	+0.6
3,435,049	+	trkA	b3290	0.37	-0.7
3,435,185	+	trkA	b3290	0.47	-1.2
3,435,275	+	trkA	b3290	0.53	-0.7
3,435,314	-	trkA	b3290	0.56	+1.6
3,435,416	+	trkA	b3290	0.64	+1.6
3,435,474	-	trkA	b3290	0.68	+2.6
3,435,476	-	trkA	b3290	0.68	-1.2