Experiment: TN_15CS_15C_10dbl_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpmA and galM are separated by 201 nucleotides galM and galK overlap by 7 nucleotides
b0755: gpmA - phosphoglyceromutase (NCBI), at 786,066 to 786,818
gpmA
b0756: galM - galactose-1-epimerase (mutarotase) (NCBI), at 787,020 to 788,060
galM
b0757: galK - galactokinase GalK (EC 2.7.1.6) <small>(from data)</small>, at 788,054 to 789,202
galK
Position (kb) 787
788
789 Strain fitness (log2 ratio) -2
-1
0
1 at 786.220 kb on + strand, within gpmA at 786.277 kb on - strand, within gpmA at 786.348 kb on + strand, within gpmA at 786.350 kb on - strand, within gpmA at 786.426 kb on - strand, within gpmA at 786.426 kb on - strand, within gpmA at 786.451 kb on - strand, within gpmA at 786.477 kb on + strand, within gpmA at 786.530 kb on - strand, within gpmA at 786.531 kb on + strand, within gpmA at 786.597 kb on - strand, within gpmA at 786.597 kb on - strand, within gpmA at 786.629 kb on - strand, within gpmA at 786.666 kb on + strand, within gpmA at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.828 kb on - strand at 786.905 kb on + strand at 786.932 kb on - strand at 786.932 kb on - strand at 787.025 kb on - strand at 787.043 kb on - strand at 787.080 kb on - strand at 787.087 kb on + strand at 787.091 kb on - strand at 787.106 kb on + strand at 787.172 kb on - strand, within galM at 787.307 kb on - strand, within galM at 787.308 kb on - strand, within galM at 787.414 kb on - strand, within galM at 787.510 kb on - strand, within galM at 787.569 kb on - strand, within galM at 787.749 kb on + strand, within galM at 787.826 kb on + strand, within galM at 787.876 kb on - strand, within galM at 787.962 kb on - strand at 787.962 kb on - strand at 787.985 kb on + strand at 788.062 kb on + strand at 788.062 kb on + strand at 788.065 kb on - strand at 788.252 kb on + strand, within galK at 788.406 kb on - strand, within galK at 788.406 kb on - strand, within galK at 788.436 kb on - strand, within galK at 788.479 kb on + strand, within galK at 788.479 kb on + strand, within galK at 788.487 kb on - strand, within galK at 788.487 kb on - strand, within galK at 788.518 kb on - strand, within galK at 788.531 kb on + strand, within galK at 788.531 kb on + strand, within galK at 788.531 kb on + strand, within galK at 788.531 kb on + strand, within galK at 788.600 kb on - strand, within galK at 788.610 kb on + strand, within galK at 788.644 kb on - strand, within galK at 788.648 kb on - strand, within galK at 788.732 kb on + strand, within galK at 788.829 kb on + strand, within galK at 788.832 kb on - strand, within galK at 789.031 kb on + strand, within galK at 789.039 kb on - strand, within galK at 789.050 kb on + strand, within galK
Per-strain Table
Position Strand Gene LocusTag Fraction TN_15CS_15C_10dbl_rep1 remove 786,220 + gpmA b0755 0.20 +0.0 786,277 - gpmA b0755 0.28 -0.3 786,348 + gpmA b0755 0.37 +0.4 786,350 - gpmA b0755 0.38 -0.1 786,426 - gpmA b0755 0.48 +0.3 786,426 - gpmA b0755 0.48 -0.2 786,451 - gpmA b0755 0.51 -0.6 786,477 + gpmA b0755 0.55 -0.0 786,530 - gpmA b0755 0.62 -0.5 786,531 + gpmA b0755 0.62 -0.1 786,597 - gpmA b0755 0.71 +0.1 786,597 - gpmA b0755 0.71 -0.5 786,629 - gpmA b0755 0.75 -0.6 786,666 + gpmA b0755 0.80 -2.2 786,814 + -0.2 786,814 + +1.5 786,814 + +0.5 786,814 + +0.3 786,814 + -1.1 786,828 - -0.0 786,905 + -0.5 786,932 - +0.1 786,932 - +0.2 787,025 - -0.2 787,043 - -0.8 787,080 - -0.1 787,087 + +0.7 787,091 - -0.3 787,106 + -0.4 787,172 - galM b0756 0.15 -0.5 787,307 - galM b0756 0.28 +0.8 787,308 - galM b0756 0.28 +0.2 787,414 - galM b0756 0.38 +0.3 787,510 - galM b0756 0.47 -0.2 787,569 - galM b0756 0.53 +0.1 787,749 + galM b0756 0.70 +0.1 787,826 + galM b0756 0.77 +0.4 787,876 - galM b0756 0.82 +0.3 787,962 - +0.3 787,962 - +0.2 787,985 + +0.1 788,062 + -0.4 788,062 + -0.1 788,065 - -0.4 788,252 + galK b0757 0.17 -0.1 788,406 - galK b0757 0.31 -1.1 788,406 - galK b0757 0.31 +0.1 788,436 - galK b0757 0.33 -0.4 788,479 + galK b0757 0.37 -0.9 788,479 + galK b0757 0.37 +0.7 788,487 - galK b0757 0.38 +0.2 788,487 - galK b0757 0.38 -0.1 788,518 - galK b0757 0.40 +0.3 788,531 + galK b0757 0.42 +0.7 788,531 + galK b0757 0.42 +0.2 788,531 + galK b0757 0.42 +0.7 788,531 + galK b0757 0.42 +0.2 788,600 - galK b0757 0.48 -0.8 788,610 + galK b0757 0.48 +0.4 788,644 - galK b0757 0.51 +0.1 788,648 - galK b0757 0.52 +0.3 788,732 + galK b0757 0.59 +0.1 788,829 + galK b0757 0.67 +0.4 788,832 - galK b0757 0.68 -0.5 789,031 + galK b0757 0.85 +0.6 789,039 - galK b0757 0.86 +0.1 789,050 + galK b0757 0.87 +0.3
Or see this region's nucleotide sequence