Strain Fitness in Escherichia coli BW25113 around b4235

Experiment: TN_18CS_warm37C_5dbl_rep3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TN_18CS_warm37C_5dbl_rep3
4,455,002	-	mpl	b4233	0.87	-0.3
4,455,020	-	mpl	b4233	0.88	-0.1
4,455,031	-	mpl	b4233	0.89	+0.1
4,455,047	-				-0.2
4,455,067	+				+0.2
4,455,067	+				+0.0
4,455,093	+				-0.4
4,455,129	+				-0.6
4,455,262	-				+0.4
4,455,351	+				-2.5
4,455,469	-	yjgA	b4234	0.24	-2.5
4,455,483	-	yjgA	b4234	0.26	-2.4
4,455,582	-	yjgA	b4234	0.44	-2.7
4,455,628	-	yjgA	b4234	0.53	-3.6
4,455,628	-	yjgA	b4234	0.53	-2.6
4,455,695	-	yjgA	b4234	0.65	-2.5
4,455,727	-	yjgA	b4234	0.71	-2.8
4,455,924	+				-0.6
4,455,960	-				-0.9
4,455,971	+				-0.3
4,456,031	-				-0.7
4,456,031	-				-0.4
4,456,053	-				-0.4
4,456,053	-				-1.1
4,456,054	+				-0.7
4,456,062	-				-0.8
4,456,062	-				-0.9
4,456,083	-				-0.7
4,456,093	-				-0.7
4,456,131	+	pmbA	b4235	0.11	-1.1
4,456,132	+	pmbA	b4235	0.11	-1.1
4,456,132	+	pmbA	b4235	0.11	-1.3
4,456,253	+	pmbA	b4235	0.20	-0.3
4,456,261	-	pmbA	b4235	0.21	-1.2
4,456,263	-	pmbA	b4235	0.21	-0.5
4,456,263	-	pmbA	b4235	0.21	-0.8
4,456,281	+	pmbA	b4235	0.22	-0.9
4,456,281	+	pmbA	b4235	0.22	-0.8
4,456,367	-	pmbA	b4235	0.28	-0.3
4,456,367	-	pmbA	b4235	0.28	-0.6
4,456,396	+	pmbA	b4235	0.31	-0.6
4,456,396	+	pmbA	b4235	0.31	-1.5
4,456,409	+	pmbA	b4235	0.32	-0.7
4,456,409	+	pmbA	b4235	0.32	-0.7
4,456,417	-	pmbA	b4235	0.32	-0.8
4,456,448	+	pmbA	b4235	0.34	-1.0
4,456,448	+	pmbA	b4235	0.34	-1.4
4,456,554	-	pmbA	b4235	0.42	-0.7
4,456,591	+	pmbA	b4235	0.45	-1.0
4,456,601	+	pmbA	b4235	0.46	-1.2
4,456,612	-	pmbA	b4235	0.47	-0.6
4,456,618	-	pmbA	b4235	0.47	-0.8
4,456,687	+	pmbA	b4235	0.52	-1.2
4,456,703	+	pmbA	b4235	0.53	-1.0
4,456,703	+	pmbA	b4235	0.53	-0.7
4,456,711	-	pmbA	b4235	0.54	-1.4
4,456,711	-	pmbA	b4235	0.54	-1.4
4,456,771	+	pmbA	b4235	0.58	-1.2
4,456,775	-	pmbA	b4235	0.59	-1.0
4,456,775	-	pmbA	b4235	0.59	-1.2
4,456,966	-	pmbA	b4235	0.73	-0.5
4,457,011	-	pmbA	b4235	0.76	-0.9
4,457,029	-	pmbA	b4235	0.77	-1.4
4,457,050	+	pmbA	b4235	0.79	-1.1
4,457,077	+	pmbA	b4235	0.81	-0.4
4,457,079	-	pmbA	b4235	0.81	-0.9
4,457,090	+	pmbA	b4235	0.82	-0.8
4,457,171	-	pmbA	b4235	0.88	-0.6
4,457,171	-	pmbA	b4235	0.88	+0.1
4,457,279	+				-0.6
4,457,279	+				-1.8
4,457,279	+				-1.0
4,457,281	+				-0.8
4,457,287	-				-1.5
4,457,287	-				-0.7
4,457,287	-				+0.5
4,457,294	+				-1.5
4,457,312	-				-1.2
4,457,433	-				-0.3
4,457,438	+				+0.1
4,457,479	+				-0.1
4,457,487	-				+0.2
4,457,487	-				-0.3
4,457,530	-				+0.3
4,457,539	-				-0.5
4,457,572	+	cybC	b4236	0.16	-0.1
4,457,632	+	cybC	b4236	0.33	-0.5
4,457,632	+	cybC	b4236	0.33	-0.4
4,457,653	+	cybC	b4236	0.38	+0.1
4,457,711	+	cybC	b4236	0.54	-0.2
4,457,788	-	cybC	b4236	0.75	+0.4
4,457,788	-	cybC	b4236	0.75	-0.4
4,457,806	+	cybC	b4236	0.80	-0.3
4,457,806	+	cybC	b4236	0.80	+0.2
4,457,831	-	cybC	b4236	0.87	+0.1
4,457,831	-	cybC	b4236	0.87	-0.0
4,457,834	-	cybC	b4236	0.88	+0.1
4,457,853	+				-0.2
4,457,853	+				-0.3
4,457,853	+				-0.0
4,457,903	-				-0.2
4,457,944	-				+0.1
4,457,944	-				-0.1
4,458,063	+	nrdG	b4237	0.30	-0.2
4,458,074	+	nrdG	b4237	0.32	-0.1
4,458,095	+	nrdG	b4237	0.37	-0.1
4,458,095	+	nrdG	b4237	0.37	-0.5
4,458,126	-	nrdG	b4237	0.44	-0.7
4,458,126	-	nrdG	b4237	0.44	-0.2
4,458,154	+	nrdG	b4237	0.50	+0.1
4,458,179	+	nrdG	b4237	0.55	-0.7
4,458,179	+	nrdG	b4237	0.55	-0.3
4,458,191	+	nrdG	b4237	0.58	-0.1
4,458,191	+	nrdG	b4237	0.58	-0.0
4,458,229	-	nrdG	b4237	0.66	-0.4
4,458,233	+	nrdG	b4237	0.67	-0.0
4,458,241	-	nrdG	b4237	0.68	-0.4
4,458,241	-	nrdG	b4237	0.68	+0.2
4,458,241	-	nrdG	b4237	0.68	+0.1
4,458,247	-	nrdG	b4237	0.70	-0.5
4,458,247	-	nrdG	b4237	0.70	-0.6
4,458,264	+	nrdG	b4237	0.73	+0.1
4,458,294	-	nrdG	b4237	0.80	-0.3
4,458,294	-	nrdG	b4237	0.80	+0.4
4,458,301	+	nrdG	b4237	0.81	+0.5