Experiment: TN_18CS_warm37C_5dbl_rep3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aaaE and ymfR are separated by 11 nucleotides ymfR and ymfO overlap by 1 nucleotides ymfO and ymfP are separated by 0 nucleotides ymfP and ymfQ overlap by 10 nucleotides
b4693: aaaE - no description, at 1,203,627 to 1,204,760
aaaE
b1150: ymfR - e14 prophage; predicted protein (NCBI), at 1,204,772 to 1,204,954
ymfR
b1151: ymfO - e14 prophage; conserved protein (RefSeq), at 1,204,954 to 1,205,365
ymfO
b1152: ymfP - orf, hypothetical protein (VIMSS), at 1,205,366 to 1,206,145
ymfP
b1153: ymfQ - e14 prophage; conserved protein (NCBI), at 1,206,136 to 1,206,720
ymfQ
Position (kb)
1204
1205
1206 Strain fitness (log2 ratio)
-1
0
1 at 1204.010 kb on + strand, within aaaE at 1204.018 kb on - strand, within aaaE at 1204.078 kb on - strand, within aaaE at 1204.084 kb on + strand, within aaaE at 1204.196 kb on + strand, within aaaE at 1204.204 kb on - strand, within aaaE at 1204.237 kb on - strand, within aaaE at 1204.391 kb on - strand, within aaaE at 1204.420 kb on - strand, within aaaE at 1204.462 kb on + strand, within aaaE at 1204.841 kb on - strand, within ymfR at 1204.996 kb on + strand, within ymfO at 1205.042 kb on - strand, within ymfO at 1205.128 kb on + strand, within ymfO at 1205.226 kb on - strand, within ymfO at 1205.226 kb on - strand, within ymfO at 1205.409 kb on + strand at 1205.409 kb on + strand at 1205.435 kb on - strand at 1205.437 kb on - strand at 1205.474 kb on + strand, within ymfP at 1205.474 kb on + strand, within ymfP at 1205.630 kb on + strand, within ymfP at 1205.661 kb on - strand, within ymfP at 1205.709 kb on - strand, within ymfP at 1205.740 kb on - strand, within ymfP at 1205.869 kb on - strand, within ymfP at 1206.162 kb on - strand at 1206.273 kb on + strand, within ymfQ
Per-strain Table
Position Strand Gene LocusTag Fraction TN_18CS_warm37C_5dbl_rep3 remove 1,204,010 + aaaE b4693 0.34 -0.0 1,204,018 - aaaE b4693 0.34 -0.1 1,204,078 - aaaE b4693 0.40 +0.1 1,204,084 + aaaE b4693 0.40 +0.5 1,204,196 + aaaE b4693 0.50 -0.6 1,204,204 - aaaE b4693 0.51 +0.1 1,204,237 - aaaE b4693 0.54 -1.7 1,204,391 - aaaE b4693 0.67 -0.6 1,204,420 - aaaE b4693 0.70 +0.0 1,204,462 + aaaE b4693 0.74 -0.5 1,204,841 - ymfR b1150 0.38 +0.2 1,204,996 + ymfO b1151 0.10 -0.0 1,205,042 - ymfO b1151 0.21 +0.0 1,205,128 + ymfO b1151 0.42 +0.3 1,205,226 - ymfO b1151 0.66 -0.0 1,205,226 - ymfO b1151 0.66 +1.6 1,205,409 + -0.2 1,205,409 + -0.3 1,205,435 - -0.1 1,205,437 - +0.3 1,205,474 + ymfP b1152 0.14 -0.4 1,205,474 + ymfP b1152 0.14 -0.8 1,205,630 + ymfP b1152 0.34 -0.2 1,205,661 - ymfP b1152 0.38 +0.0 1,205,709 - ymfP b1152 0.44 -0.1 1,205,740 - ymfP b1152 0.48 -0.0 1,205,869 - ymfP b1152 0.64 -0.1 1,206,162 - +0.1 1,206,273 + ymfQ b1153 0.23 +0.3
Or see this region's nucleotide sequence