Experiment: TN_18CS_warm37C_5dbl_rep3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaT and cueR are separated by 124 nucleotides cueR and ybbJ are separated by 0 nucleotides ybbJ and ybbK overlap by 4 nucleotides
b0486: ybaT - predicted transporter (NCBI), at 511,800 to 513,092
ybaT
b0487: cueR - DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI), at 513,217 to 513,624
cueR
b0488: ybbJ - conserved inner membrane protein (RefSeq), at 513,625 to 514,083
ybbJ
b0489: ybbK - predicted protease, membrane anchored (NCBI), at 514,080 to 514,997
ybbK
Position (kb) 513
514
515 Strain fitness (log2 ratio) -1
0
1 at 512.771 kb on + strand, within ybaT at 512.830 kb on + strand, within ybaT at 512.830 kb on + strand, within ybaT at 512.846 kb on - strand, within ybaT at 512.886 kb on + strand, within ybaT at 512.890 kb on + strand, within ybaT at 512.953 kb on + strand, within ybaT at 512.958 kb on + strand, within ybaT at 512.958 kb on + strand, within ybaT at 512.991 kb on + strand at 512.998 kb on + strand at 512.998 kb on + strand at 513.013 kb on - strand at 513.013 kb on - strand at 513.039 kb on + strand at 513.039 kb on + strand at 513.057 kb on - strand at 513.057 kb on - strand at 513.057 kb on - strand at 513.077 kb on + strand at 513.077 kb on + strand at 513.095 kb on - strand at 513.107 kb on + strand at 513.109 kb on + strand at 513.182 kb on + strand at 513.205 kb on - strand at 513.287 kb on - strand, within cueR at 513.295 kb on - strand, within cueR at 513.431 kb on - strand, within cueR at 513.480 kb on + strand, within cueR at 513.537 kb on - strand, within cueR at 513.537 kb on - strand, within cueR at 513.700 kb on - strand, within ybbJ at 513.728 kb on - strand, within ybbJ at 513.742 kb on + strand, within ybbJ at 513.742 kb on + strand, within ybbJ at 513.949 kb on - strand, within ybbJ at 513.949 kb on - strand, within ybbJ at 513.958 kb on + strand, within ybbJ at 513.958 kb on + strand, within ybbJ at 513.977 kb on + strand, within ybbJ at 514.116 kb on - strand at 514.116 kb on - strand at 514.118 kb on - strand at 514.118 kb on - strand at 514.129 kb on - strand at 514.133 kb on - strand at 514.133 kb on - strand at 514.142 kb on + strand at 514.142 kb on + strand at 514.185 kb on + strand, within ybbK at 514.473 kb on - strand, within ybbK at 514.546 kb on - strand, within ybbK at 514.636 kb on - strand, within ybbK at 514.645 kb on + strand at 514.653 kb on - strand, within ybbK at 514.653 kb on - strand, within ybbK at 514.662 kb on + strand, within ybbK at 514.697 kb on + strand, within ybbK at 514.806 kb on - strand, within ybbK at 514.851 kb on - strand, within ybbK at 514.853 kb on + strand, within ybbK at 514.853 kb on + strand, within ybbK at 514.863 kb on - strand, within ybbK at 514.863 kb on - strand, within ybbK at 514.907 kb on - strand at 514.907 kb on - strand at 514.959 kb on - strand at 515.010 kb on + strand at 515.018 kb on - strand at 515.018 kb on - strand at 515.018 kb on - strand at 515.020 kb on + strand at 515.020 kb on + strand at 515.020 kb on + strand at 515.021 kb on + strand at 515.021 kb on + strand at 515.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TN_18CS_warm37C_5dbl_rep3 remove 512,771 + ybaT b0486 0.75 -0.1 512,830 + ybaT b0486 0.80 -0.1 512,830 + ybaT b0486 0.80 -0.1 512,846 - ybaT b0486 0.81 -0.3 512,886 + ybaT b0486 0.84 -0.2 512,890 + ybaT b0486 0.84 -0.4 512,953 + ybaT b0486 0.89 +0.4 512,958 + ybaT b0486 0.90 +0.1 512,958 + ybaT b0486 0.90 -0.8 512,991 + -0.2 512,998 + -0.6 512,998 + -0.3 513,013 - +0.0 513,013 - -0.6 513,039 + -1.3 513,039 + -0.2 513,057 - +0.6 513,057 - -0.2 513,057 - -0.1 513,077 + -0.3 513,077 + -0.5 513,095 - -0.1 513,107 + -0.4 513,109 + -0.2 513,182 + +0.1 513,205 - -0.2 513,287 - cueR b0487 0.17 +0.8 513,295 - cueR b0487 0.19 -0.1 513,431 - cueR b0487 0.52 -0.1 513,480 + cueR b0487 0.64 -0.2 513,537 - cueR b0487 0.78 +0.3 513,537 - cueR b0487 0.78 -0.2 513,700 - ybbJ b0488 0.16 -0.3 513,728 - ybbJ b0488 0.22 +0.2 513,742 + ybbJ b0488 0.25 +0.2 513,742 + ybbJ b0488 0.25 -0.0 513,949 - ybbJ b0488 0.71 +0.1 513,949 - ybbJ b0488 0.71 +0.6 513,958 + ybbJ b0488 0.73 +0.3 513,958 + ybbJ b0488 0.73 +0.1 513,977 + ybbJ b0488 0.77 +0.9 514,116 - +0.0 514,116 - -0.2 514,118 - -0.3 514,118 - -1.1 514,129 - -0.1 514,133 - -0.1 514,133 - -0.1 514,142 + +0.4 514,142 + +0.1 514,185 + ybbK b0489 0.11 +0.4 514,473 - ybbK b0489 0.43 -0.0 514,546 - ybbK b0489 0.51 -0.3 514,636 - ybbK b0489 0.61 +0.2 514,645 + -1.6 514,653 - ybbK b0489 0.62 -1.1 514,653 - ybbK b0489 0.62 +0.6 514,662 + ybbK b0489 0.63 -0.3 514,697 + ybbK b0489 0.67 +0.0 514,806 - ybbK b0489 0.79 -0.0 514,851 - ybbK b0489 0.84 +0.7 514,853 + ybbK b0489 0.84 +0.0 514,853 + ybbK b0489 0.84 -0.4 514,863 - ybbK b0489 0.85 +0.1 514,863 - ybbK b0489 0.85 +0.3 514,907 - -1.1 514,907 - -0.8 514,959 - -0.7 515,010 + -0.8 515,018 - +0.3 515,018 - +0.6 515,018 - -0.6 515,020 + -0.3 515,020 + +0.1 515,020 + -1.7 515,021 + +0.2 515,021 + +0.1 515,055 + -0.5
Or see this region's nucleotide sequence