Strain Fitness in Escherichia coli BW25113 around b3678

Experiment: TN_18CS_18C_5dbl_rep3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TN_18CS_18C_5dbl_rep3
3,853,959	-				-0.8
3,853,959	-				+0.2
3,853,993	+				+0.1
3,854,005	-				-0.2
3,854,011	-				-0.1
3,854,011	-				+0.2
3,854,053	-	yidH	b3676	0.20	-0.4
3,854,062	+	yidH	b3676	0.23	+0.3
3,854,062	+	yidH	b3676	0.23	-0.0
3,854,062	+	yidH	b3676	0.23	+0.6
3,854,080	+	yidH	b3676	0.28	+0.4
3,854,080	+	yidH	b3676	0.28	-0.3
3,854,129	-	yidH	b3676	0.42	+0.6
3,854,214	-	yidH	b3676	0.66	+0.3
3,854,214	-	yidH	b3676	0.66	-0.4
3,854,251	-	yidH	b3676	0.77	-0.6
3,854,251	-	yidH	b3676	0.77	-0.0
3,854,305	+				-0.3
3,854,356	+				+0.1
3,854,357	+				+0.6
3,854,357	+				-0.2
3,854,445	+				-1.1
3,854,445	-				-0.0
3,854,448	-				-0.2
3,854,448	-				+0.8
3,854,450	-				-0.7
3,854,562	+	yidI	b3677	0.28	-0.2
3,854,562	+	yidI	b3677	0.28	+0.3
3,854,575	-	yidI	b3677	0.30	-0.2
3,854,595	-	yidI	b3677	0.35	+0.3
3,854,693	-	yidI	b3677	0.57	+0.4
3,854,705	-	yidI	b3677	0.59	-0.8
3,854,705	-	yidI	b3677	0.59	+0.2
3,854,708	-	yidI	b3677	0.60	+0.2
3,854,743	-	yidI	b3677	0.68	+0.9
3,854,770	+	yidI	b3677	0.74	+0.2
3,854,803	-	yidI	b3677	0.81	+0.0
3,854,803	-	yidI	b3677	0.81	-0.8
3,854,889	-				+0.7
3,854,889	-				-0.2
3,854,908	-				+0.1
3,854,932	+				+0.3
3,854,997	+				-0.2
3,855,018	+				+0.4
3,855,018	+				-0.1
3,855,049	-				+0.0
3,855,053	-				+0.8
3,855,053	-				+0.0
3,855,064	-				+0.2
3,855,064	-				+0.2
3,855,072	-				-0.2
3,855,072	-				+0.2
3,855,132	-	yidJ	b3678	0.13	+0.2
3,855,265	-	yidJ	b3678	0.22	+0.4
3,855,265	-	yidJ	b3678	0.22	+0.6
3,855,307	-	yidJ	b3678	0.25	+0.5
3,855,327	-	yidJ	b3678	0.26	+0.1
3,855,399	-	yidJ	b3678	0.31	-0.7
3,855,450	+	yidJ	b3678	0.35	+1.9
3,855,475	-	yidJ	b3678	0.36	+0.0
3,855,548	+	yidJ	b3678	0.41	+0.1
3,855,556	-	yidJ	b3678	0.42	+0.2
3,855,582	+	yidJ	b3678	0.43	+0.1
3,855,681	-	yidJ	b3678	0.50	-0.1
3,855,695	-	yidJ	b3678	0.51	-0.3
3,855,706	-	yidJ	b3678	0.52	+0.4
3,855,718	+	yidJ	b3678	0.52	+0.0
3,855,718	+	yidJ	b3678	0.52	-0.1
3,855,791	-	yidJ	b3678	0.57	+0.2
3,855,791	-	yidJ	b3678	0.57	+0.0
3,855,864	-	yidJ	b3678	0.62	+1.6
3,855,883	-	yidJ	b3678	0.64	+0.5
3,855,883	-	yidJ	b3678	0.64	+0.1
3,855,990	+	yidJ	b3678	0.71	-0.9
3,855,990	+	yidJ	b3678	0.71	+0.3
3,855,998	-	yidJ	b3678	0.71	+0.0
3,856,034	+	yidJ	b3678	0.74	+1.2
3,856,034	+	yidJ	b3678	0.74	+0.2
3,856,042	-	yidJ	b3678	0.74	-0.5
3,856,043	+	yidJ	b3678	0.74	+0.2
3,856,060	-	yidJ	b3678	0.75	+0.0
3,856,104	-	yidJ	b3678	0.78	+0.3
3,856,151	+	yidJ	b3678	0.81	+0.2
3,856,175	+	yidJ	b3678	0.83	-0.2
3,856,180	-	yidJ	b3678	0.83	+0.0
3,856,183	-	yidJ	b3678	0.84	+0.3
3,856,183	-	yidJ	b3678	0.84	+0.5
3,856,227	-	yidJ	b3678	0.87	+0.8
3,856,227	-	yidJ	b3678	0.87	+0.7
3,856,242	-	yidJ	b3678	0.88	-0.2
3,856,270	-	yidJ	b3678	0.89	+0.2
3,856,378	+				+0.0
3,856,423	+				-0.1
3,856,436	-				-0.3
3,856,474	-				-0.1
3,856,532	-				+0.2
3,856,644	+	yidK	b3679	0.13	+0.4
3,856,745	+	yidK	b3679	0.19	+0.1
3,856,745	+	yidK	b3679	0.19	-0.0
3,856,753	-	yidK	b3679	0.19	+0.1
3,856,766	-	yidK	b3679	0.20	+0.1
3,856,783	+	yidK	b3679	0.21	-0.3
3,856,785	-	yidK	b3679	0.21	-0.0
3,856,785	-	yidK	b3679	0.21	-0.5
3,856,787	+	yidK	b3679	0.21	+0.2
3,856,787	+	yidK	b3679	0.21	+0.5
3,856,864	+	yidK	b3679	0.26	-0.4
3,856,864	+	yidK	b3679	0.26	-0.7
3,856,881	+	yidK	b3679	0.27	-0.0
3,856,931	-	yidK	b3679	0.30	-0.2
3,856,972	-	yidK	b3679	0.32	-2.9
3,857,013	+	yidK	b3679	0.34	+0.2
3,857,057	+	yidK	b3679	0.37	+0.4
3,857,093	-	yidK	b3679	0.39	+0.4
3,857,126	+	yidK	b3679	0.41	-0.0
3,857,134	-	yidK	b3679	0.41	-0.6
3,857,134	-	yidK	b3679	0.41	+0.3
3,857,134	-	yidK	b3679	0.41	+0.2
3,857,148	+	yidK	b3679	0.42	+0.1
3,857,169	+	yidK	b3679	0.43	+0.3
3,857,187	+	yidK	b3679	0.44	+0.4
3,857,190	-	yidK	b3679	0.45	+0.3
3,857,195	-	yidK	b3679	0.45	-0.3
3,857,232	-	yidK	b3679	0.47	+0.4
3,857,232	-	yidK	b3679	0.47	-0.3
3,857,262	-	yidK	b3679	0.49	+0.4
3,857,262	-	yidK	b3679	0.49	+0.4
3,857,353	+	yidK	b3679	0.54	-0.7
3,857,361	-	yidK	b3679	0.55	+0.4
3,857,365	+	yidK	b3679	0.55	-0.0
3,857,378	+	yidK	b3679	0.56	-0.4
3,857,378	+	yidK	b3679	0.56	-0.0
3,857,401	-	yidK	b3679	0.57	+0.2