Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16460

Experiment: polygalacturonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS16450 and ABZR88_RS16455 are separated by 47 nucleotidesABZR88_RS16455 and ABZR88_RS16460 are separated by 90 nucleotidesABZR88_RS16460 and ABZR88_RS16465 are separated by 244 nucleotides ABZR88_RS16450: ABZR88_RS16450 - hypothetical protein, at 4,043,495 to 4,044,256 _RS16450 ABZR88_RS16455: ABZR88_RS16455 - hypothetical protein, at 4,044,304 to 4,045,065 _RS16455 ABZR88_RS16460: ABZR88_RS16460 - catalase/peroxidase HPI, at 4,045,156 to 4,047,387 _RS16460 ABZR88_RS16465: ABZR88_RS16465 - hypothetical protein, at 4,047,632 to 4,048,858 _RS16465 Position (kb) 4045 4046 4047 4048Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4044.244 kb on + strandat 4044.324 kb on + strandat 4044.653 kb on + strand, within ABZR88_RS16455at 4044.653 kb on + strand, within ABZR88_RS16455at 4044.654 kb on - strand, within ABZR88_RS16455at 4044.654 kb on - strand, within ABZR88_RS16455at 4044.735 kb on - strand, within ABZR88_RS16455at 4044.735 kb on - strand, within ABZR88_RS16455at 4044.770 kb on + strand, within ABZR88_RS16455at 4044.832 kb on - strand, within ABZR88_RS16455at 4044.885 kb on - strand, within ABZR88_RS16455at 4045.016 kb on - strandat 4045.120 kb on + strandat 4045.473 kb on - strand, within ABZR88_RS16460at 4045.573 kb on - strand, within ABZR88_RS16460at 4046.115 kb on + strand, within ABZR88_RS16460at 4046.348 kb on - strand, within ABZR88_RS16460at 4046.389 kb on - strand, within ABZR88_RS16460at 4046.466 kb on - strand, within ABZR88_RS16460at 4046.525 kb on - strand, within ABZR88_RS16460at 4046.591 kb on - strand, within ABZR88_RS16460at 4046.812 kb on + strand, within ABZR88_RS16460at 4046.813 kb on - strand, within ABZR88_RS16460at 4047.099 kb on - strand, within ABZR88_RS16460at 4047.243 kb on + strandat 4047.361 kb on - strandat 4047.366 kb on - strandat 4047.412 kb on + strandat 4047.468 kb on + strandat 4047.469 kb on - strandat 4047.512 kb on - strandat 4047.549 kb on + strandat 4047.572 kb on - strandat 4047.580 kb on + strandat 4047.606 kb on + strandat 4047.908 kb on + strand, within ABZR88_RS16465at 4047.909 kb on - strand, within ABZR88_RS16465at 4047.909 kb on - strand, within ABZR88_RS16465at 4047.998 kb on - strand, within ABZR88_RS16465at 4047.998 kb on - strand, within ABZR88_RS16465at 4048.018 kb on + strand, within ABZR88_RS16465at 4048.021 kb on + strand, within ABZR88_RS16465at 4048.090 kb on + strand, within ABZR88_RS16465at 4048.106 kb on - strand, within ABZR88_RS16465at 4048.124 kb on - strand, within ABZR88_RS16465at 4048.128 kb on - strand, within ABZR88_RS16465at 4048.250 kb on + strand, within ABZR88_RS16465at 4048.250 kb on + strand, within ABZR88_RS16465at 4048.359 kb on - strand, within ABZR88_RS16465at 4048.369 kb on + strand, within ABZR88_RS16465at 4048.373 kb on + strand, within ABZR88_RS16465at 4048.382 kb on - strand, within ABZR88_RS16465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
remove
4,044,244 + -0.6
4,044,324 + +0.0
4,044,653 + ABZR88_RS16455 0.46 -1.2
4,044,653 + ABZR88_RS16455 0.46 +1.0
4,044,654 - ABZR88_RS16455 0.46 +0.5
4,044,654 - ABZR88_RS16455 0.46 -0.9
4,044,735 - ABZR88_RS16455 0.57 -0.4
4,044,735 - ABZR88_RS16455 0.57 -0.5
4,044,770 + ABZR88_RS16455 0.61 -1.3
4,044,832 - ABZR88_RS16455 0.69 -0.4
4,044,885 - ABZR88_RS16455 0.76 +1.0
4,045,016 - +0.1
4,045,120 + -3.0
4,045,473 - ABZR88_RS16460 0.14 -5.0
4,045,573 - ABZR88_RS16460 0.19 -2.1
4,046,115 + ABZR88_RS16460 0.43 -2.8
4,046,348 - ABZR88_RS16460 0.53 -3.6
4,046,389 - ABZR88_RS16460 0.55 -3.3
4,046,466 - ABZR88_RS16460 0.59 +1.2
4,046,525 - ABZR88_RS16460 0.61 -3.0
4,046,591 - ABZR88_RS16460 0.64 +0.4
4,046,812 + ABZR88_RS16460 0.74 -2.3
4,046,813 - ABZR88_RS16460 0.74 -1.1
4,047,099 - ABZR88_RS16460 0.87 -3.7
4,047,243 + -1.0
4,047,361 - -1.0
4,047,366 - -3.0
4,047,412 + -1.4
4,047,468 + -0.0
4,047,469 - -0.5
4,047,512 - +3.6
4,047,549 + +1.0
4,047,572 - +1.2
4,047,580 + +0.0
4,047,606 + +0.1
4,047,908 + ABZR88_RS16465 0.22 +0.1
4,047,909 - ABZR88_RS16465 0.23 +1.0
4,047,909 - ABZR88_RS16465 0.23 +1.0
4,047,998 - ABZR88_RS16465 0.30 +1.0
4,047,998 - ABZR88_RS16465 0.30 +1.7
4,048,018 + ABZR88_RS16465 0.31 +0.5
4,048,021 + ABZR88_RS16465 0.32 +0.1
4,048,090 + ABZR88_RS16465 0.37 -1.3
4,048,106 - ABZR88_RS16465 0.39 +0.8
4,048,124 - ABZR88_RS16465 0.40 -0.5
4,048,128 - ABZR88_RS16465 0.40 +1.7
4,048,250 + ABZR88_RS16465 0.50 +1.7
4,048,250 + ABZR88_RS16465 0.50 +1.0
4,048,359 - ABZR88_RS16465 0.59 +1.7
4,048,369 + ABZR88_RS16465 0.60 +0.9
4,048,373 + ABZR88_RS16465 0.60 +1.1
4,048,382 - ABZR88_RS16465 0.61 +0.1

Or see this region's nucleotide sequence