Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13430 and ABZR88_RS13435 are separated by 105 nucleotides ABZR88_RS13435 and ABZR88_RS13440 are separated by 25 nucleotides
ABZR88_RS13430: ABZR88_RS13430 - long-chain fatty acid--CoA ligase, at 3,332,418 to 3,334,232
_RS13430
ABZR88_RS13435: ABZR88_RS13435 - acetyl-CoA C-acyltransferase, at 3,334,338 to 3,335,513
_RS13435
ABZR88_RS13440: ABZR88_RS13440 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 3,335,539 to 3,337,920
_RS13440
Position (kb)
3334
3335
3336 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3333.383 kb on + strand, within ABZR88_RS13430 at 3333.624 kb on + strand, within ABZR88_RS13430 at 3333.682 kb on + strand, within ABZR88_RS13430 at 3333.815 kb on + strand, within ABZR88_RS13430 at 3333.815 kb on + strand, within ABZR88_RS13430 at 3333.858 kb on - strand, within ABZR88_RS13430 at 3333.862 kb on + strand, within ABZR88_RS13430 at 3333.863 kb on - strand, within ABZR88_RS13430 at 3334.130 kb on + strand at 3334.133 kb on - strand at 3334.236 kb on + strand at 3334.328 kb on - strand at 3334.328 kb on - strand at 3334.331 kb on + strand at 3334.354 kb on - strand at 3334.545 kb on + strand, within ABZR88_RS13435 at 3334.625 kb on + strand, within ABZR88_RS13435 at 3334.684 kb on + strand, within ABZR88_RS13435 at 3334.690 kb on - strand, within ABZR88_RS13435 at 3334.716 kb on - strand, within ABZR88_RS13435 at 3334.850 kb on + strand, within ABZR88_RS13435 at 3334.851 kb on - strand, within ABZR88_RS13435 at 3335.068 kb on - strand, within ABZR88_RS13435 at 3335.500 kb on - strand at 3335.614 kb on + strand at 3335.645 kb on + strand at 3335.645 kb on + strand at 3335.809 kb on - strand, within ABZR88_RS13440 at 3336.063 kb on + strand, within ABZR88_RS13440 at 3336.149 kb on - strand, within ABZR88_RS13440 at 3336.216 kb on - strand, within ABZR88_RS13440 at 3336.250 kb on + strand, within ABZR88_RS13440
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,333,383 + ABZR88_RS13430 0.53 +0.4 3,333,624 + ABZR88_RS13430 0.66 -0.8 3,333,682 + ABZR88_RS13430 0.70 -0.1 3,333,815 + ABZR88_RS13430 0.77 +0.4 3,333,815 + ABZR88_RS13430 0.77 +0.6 3,333,858 - ABZR88_RS13430 0.79 -0.3 3,333,862 + ABZR88_RS13430 0.80 +0.1 3,333,863 - ABZR88_RS13430 0.80 +0.3 3,334,130 + +0.7 3,334,133 - -1.4 3,334,236 + +1.2 3,334,328 - +1.3 3,334,328 - +1.2 3,334,331 + +0.6 3,334,354 - +1.5 3,334,545 + ABZR88_RS13435 0.18 +1.4 3,334,625 + ABZR88_RS13435 0.24 +0.9 3,334,684 + ABZR88_RS13435 0.29 +1.2 3,334,690 - ABZR88_RS13435 0.30 +1.3 3,334,716 - ABZR88_RS13435 0.32 +1.8 3,334,850 + ABZR88_RS13435 0.44 +1.8 3,334,851 - ABZR88_RS13435 0.44 +1.8 3,335,068 - ABZR88_RS13435 0.62 +0.8 3,335,500 - +0.9 3,335,614 + +0.7 3,335,645 + +0.8 3,335,645 + +1.7 3,335,809 - ABZR88_RS13440 0.11 +1.1 3,336,063 + ABZR88_RS13440 0.22 +0.3 3,336,149 - ABZR88_RS13440 0.26 +2.8 3,336,216 - ABZR88_RS13440 0.28 -0.0 3,336,250 + ABZR88_RS13440 0.30 +1.5
Or see this region's nucleotide sequence