Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13435

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13430 and ABZR88_RS13435 are separated by 105 nucleotidesABZR88_RS13435 and ABZR88_RS13440 are separated by 25 nucleotides ABZR88_RS13430: ABZR88_RS13430 - long-chain fatty acid--CoA ligase, at 3,332,418 to 3,334,232 _RS13430 ABZR88_RS13435: ABZR88_RS13435 - acetyl-CoA C-acyltransferase, at 3,334,338 to 3,335,513 _RS13435 ABZR88_RS13440: ABZR88_RS13440 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 3,335,539 to 3,337,920 _RS13440 Position (kb) 3334 3335 3336Strain fitness (log2 ratio) -1 0 1 2 3at 3333.383 kb on + strand, within ABZR88_RS13430at 3333.624 kb on + strand, within ABZR88_RS13430at 3333.682 kb on + strand, within ABZR88_RS13430at 3333.815 kb on + strand, within ABZR88_RS13430at 3333.815 kb on + strand, within ABZR88_RS13430at 3333.858 kb on - strand, within ABZR88_RS13430at 3333.862 kb on + strand, within ABZR88_RS13430at 3333.863 kb on - strand, within ABZR88_RS13430at 3334.130 kb on + strandat 3334.133 kb on - strandat 3334.236 kb on + strandat 3334.328 kb on - strandat 3334.328 kb on - strandat 3334.331 kb on + strandat 3334.354 kb on - strandat 3334.545 kb on + strand, within ABZR88_RS13435at 3334.625 kb on + strand, within ABZR88_RS13435at 3334.684 kb on + strand, within ABZR88_RS13435at 3334.690 kb on - strand, within ABZR88_RS13435at 3334.716 kb on - strand, within ABZR88_RS13435at 3334.850 kb on + strand, within ABZR88_RS13435at 3334.851 kb on - strand, within ABZR88_RS13435at 3335.068 kb on - strand, within ABZR88_RS13435at 3335.500 kb on - strandat 3335.614 kb on + strandat 3335.645 kb on + strandat 3335.645 kb on + strandat 3335.809 kb on - strand, within ABZR88_RS13440at 3336.063 kb on + strand, within ABZR88_RS13440at 3336.149 kb on - strand, within ABZR88_RS13440at 3336.216 kb on - strand, within ABZR88_RS13440at 3336.250 kb on + strand, within ABZR88_RS13440

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,333,383 + ABZR88_RS13430 0.53 +0.4
3,333,624 + ABZR88_RS13430 0.66 -0.8
3,333,682 + ABZR88_RS13430 0.70 -0.1
3,333,815 + ABZR88_RS13430 0.77 +0.4
3,333,815 + ABZR88_RS13430 0.77 +0.6
3,333,858 - ABZR88_RS13430 0.79 -0.3
3,333,862 + ABZR88_RS13430 0.80 +0.1
3,333,863 - ABZR88_RS13430 0.80 +0.3
3,334,130 + +0.7
3,334,133 - -1.4
3,334,236 + +1.2
3,334,328 - +1.3
3,334,328 - +1.2
3,334,331 + +0.6
3,334,354 - +1.5
3,334,545 + ABZR88_RS13435 0.18 +1.4
3,334,625 + ABZR88_RS13435 0.24 +0.9
3,334,684 + ABZR88_RS13435 0.29 +1.2
3,334,690 - ABZR88_RS13435 0.30 +1.3
3,334,716 - ABZR88_RS13435 0.32 +1.8
3,334,850 + ABZR88_RS13435 0.44 +1.8
3,334,851 - ABZR88_RS13435 0.44 +1.8
3,335,068 - ABZR88_RS13435 0.62 +0.8
3,335,500 - +0.9
3,335,614 + +0.7
3,335,645 + +0.8
3,335,645 + +1.7
3,335,809 - ABZR88_RS13440 0.11 +1.1
3,336,063 + ABZR88_RS13440 0.22 +0.3
3,336,149 - ABZR88_RS13440 0.26 +2.8
3,336,216 - ABZR88_RS13440 0.28 -0.0
3,336,250 + ABZR88_RS13440 0.30 +1.5

Or see this region's nucleotide sequence