Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12920 and ABZR88_RS12925 are separated by 88 nucleotides ABZR88_RS12925 and ABZR88_RS12930 are separated by 319 nucleotides
ABZR88_RS12920: ABZR88_RS12920 - RNA polymerase sigma-70 factor, at 3,176,682 to 3,177,248
_RS12920
ABZR88_RS12925: ABZR88_RS12925 - FecR family protein, at 3,177,337 to 3,178,518
_RS12925
ABZR88_RS12930: ABZR88_RS12930 - TonB-dependent receptor, at 3,178,838 to 3,182,191
_RS12930
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3176.364 kb on + strand at 3176.365 kb on - strand at 3176.446 kb on + strand at 3176.505 kb on + strand at 3176.618 kb on + strand at 3176.726 kb on - strand at 3176.789 kb on - strand, within ABZR88_RS12920 at 3176.870 kb on + strand, within ABZR88_RS12920 at 3176.876 kb on + strand, within ABZR88_RS12920 at 3176.937 kb on - strand, within ABZR88_RS12920 at 3176.937 kb on - strand, within ABZR88_RS12920 at 3177.029 kb on - strand, within ABZR88_RS12920 at 3177.294 kb on + strand at 3177.328 kb on + strand at 3177.357 kb on + strand at 3177.358 kb on - strand at 3177.362 kb on - strand at 3177.566 kb on + strand, within ABZR88_RS12925 at 3177.592 kb on + strand, within ABZR88_RS12925 at 3177.890 kb on - strand, within ABZR88_RS12925 at 3177.982 kb on + strand, within ABZR88_RS12925 at 3178.036 kb on + strand, within ABZR88_RS12925 at 3178.150 kb on + strand, within ABZR88_RS12925 at 3178.151 kb on - strand, within ABZR88_RS12925 at 3178.213 kb on - strand, within ABZR88_RS12925 at 3178.381 kb on + strand, within ABZR88_RS12925 at 3178.390 kb on - strand, within ABZR88_RS12925 at 3178.480 kb on - strand at 3178.523 kb on - strand at 3178.556 kb on - strand at 3178.621 kb on + strand at 3178.654 kb on + strand at 3178.716 kb on - strand at 3178.716 kb on - strand at 3178.716 kb on - strand at 3178.779 kb on - strand at 3178.851 kb on + strand at 3178.881 kb on + strand at 3178.896 kb on + strand at 3178.896 kb on + strand at 3179.048 kb on - strand at 3179.097 kb on - strand at 3179.124 kb on + strand at 3179.154 kb on + strand at 3179.154 kb on + strand at 3179.322 kb on + strand, within ABZR88_RS12930 at 3179.418 kb on + strand, within ABZR88_RS12930
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,176,364 + +0.1 3,176,365 - -1.5 3,176,446 + +0.6 3,176,505 + +0.1 3,176,618 + +0.2 3,176,726 - +0.1 3,176,789 - ABZR88_RS12920 0.19 +0.6 3,176,870 + ABZR88_RS12920 0.33 +0.8 3,176,876 + ABZR88_RS12920 0.34 +0.6 3,176,937 - ABZR88_RS12920 0.45 +1.0 3,176,937 - ABZR88_RS12920 0.45 -0.1 3,177,029 - ABZR88_RS12920 0.61 -0.1 3,177,294 + -0.7 3,177,328 + -0.4 3,177,357 + -0.0 3,177,358 - -0.5 3,177,362 - +0.3 3,177,566 + ABZR88_RS12925 0.19 -0.5 3,177,592 + ABZR88_RS12925 0.22 -1.0 3,177,890 - ABZR88_RS12925 0.47 +0.9 3,177,982 + ABZR88_RS12925 0.55 +0.9 3,178,036 + ABZR88_RS12925 0.59 +0.3 3,178,150 + ABZR88_RS12925 0.69 +1.3 3,178,151 - ABZR88_RS12925 0.69 +1.1 3,178,213 - ABZR88_RS12925 0.74 +2.1 3,178,381 + ABZR88_RS12925 0.88 +1.6 3,178,390 - ABZR88_RS12925 0.89 +1.6 3,178,480 - +2.2 3,178,523 - +1.0 3,178,556 - +0.5 3,178,621 + +0.6 3,178,654 + +0.6 3,178,716 - -0.1 3,178,716 - -0.2 3,178,716 - +0.3 3,178,779 - -0.9 3,178,851 + -0.3 3,178,881 + -0.0 3,178,896 + -0.3 3,178,896 + -3.0 3,179,048 - -0.3 3,179,097 - +0.2 3,179,124 + +0.3 3,179,154 + -0.4 3,179,154 + +3.1 3,179,322 + ABZR88_RS12930 0.14 +0.4 3,179,418 + ABZR88_RS12930 0.17 -0.0
Or see this region's nucleotide sequence