Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12925

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12920 and ABZR88_RS12925 are separated by 88 nucleotidesABZR88_RS12925 and ABZR88_RS12930 are separated by 319 nucleotides ABZR88_RS12920: ABZR88_RS12920 - RNA polymerase sigma-70 factor, at 3,176,682 to 3,177,248 _RS12920 ABZR88_RS12925: ABZR88_RS12925 - FecR family protein, at 3,177,337 to 3,178,518 _RS12925 ABZR88_RS12930: ABZR88_RS12930 - TonB-dependent receptor, at 3,178,838 to 3,182,191 _RS12930 Position (kb) 3177 3178 3179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3176.364 kb on + strandat 3176.365 kb on - strandat 3176.446 kb on + strandat 3176.505 kb on + strandat 3176.618 kb on + strandat 3176.726 kb on - strandat 3176.789 kb on - strand, within ABZR88_RS12920at 3176.870 kb on + strand, within ABZR88_RS12920at 3176.876 kb on + strand, within ABZR88_RS12920at 3176.937 kb on - strand, within ABZR88_RS12920at 3176.937 kb on - strand, within ABZR88_RS12920at 3177.029 kb on - strand, within ABZR88_RS12920at 3177.294 kb on + strandat 3177.328 kb on + strandat 3177.357 kb on + strandat 3177.358 kb on - strandat 3177.362 kb on - strandat 3177.566 kb on + strand, within ABZR88_RS12925at 3177.592 kb on + strand, within ABZR88_RS12925at 3177.890 kb on - strand, within ABZR88_RS12925at 3177.982 kb on + strand, within ABZR88_RS12925at 3178.036 kb on + strand, within ABZR88_RS12925at 3178.150 kb on + strand, within ABZR88_RS12925at 3178.151 kb on - strand, within ABZR88_RS12925at 3178.213 kb on - strand, within ABZR88_RS12925at 3178.381 kb on + strand, within ABZR88_RS12925at 3178.390 kb on - strand, within ABZR88_RS12925at 3178.480 kb on - strandat 3178.523 kb on - strandat 3178.556 kb on - strandat 3178.621 kb on + strandat 3178.654 kb on + strandat 3178.716 kb on - strandat 3178.716 kb on - strandat 3178.716 kb on - strandat 3178.779 kb on - strandat 3178.851 kb on + strandat 3178.881 kb on + strandat 3178.896 kb on + strandat 3178.896 kb on + strandat 3179.048 kb on - strandat 3179.097 kb on - strandat 3179.124 kb on + strandat 3179.154 kb on + strandat 3179.154 kb on + strandat 3179.322 kb on + strand, within ABZR88_RS12930at 3179.418 kb on + strand, within ABZR88_RS12930

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,176,364 + +0.1
3,176,365 - -1.5
3,176,446 + +0.6
3,176,505 + +0.1
3,176,618 + +0.2
3,176,726 - +0.1
3,176,789 - ABZR88_RS12920 0.19 +0.6
3,176,870 + ABZR88_RS12920 0.33 +0.8
3,176,876 + ABZR88_RS12920 0.34 +0.6
3,176,937 - ABZR88_RS12920 0.45 +1.0
3,176,937 - ABZR88_RS12920 0.45 -0.1
3,177,029 - ABZR88_RS12920 0.61 -0.1
3,177,294 + -0.7
3,177,328 + -0.4
3,177,357 + -0.0
3,177,358 - -0.5
3,177,362 - +0.3
3,177,566 + ABZR88_RS12925 0.19 -0.5
3,177,592 + ABZR88_RS12925 0.22 -1.0
3,177,890 - ABZR88_RS12925 0.47 +0.9
3,177,982 + ABZR88_RS12925 0.55 +0.9
3,178,036 + ABZR88_RS12925 0.59 +0.3
3,178,150 + ABZR88_RS12925 0.69 +1.3
3,178,151 - ABZR88_RS12925 0.69 +1.1
3,178,213 - ABZR88_RS12925 0.74 +2.1
3,178,381 + ABZR88_RS12925 0.88 +1.6
3,178,390 - ABZR88_RS12925 0.89 +1.6
3,178,480 - +2.2
3,178,523 - +1.0
3,178,556 - +0.5
3,178,621 + +0.6
3,178,654 + +0.6
3,178,716 - -0.1
3,178,716 - -0.2
3,178,716 - +0.3
3,178,779 - -0.9
3,178,851 + -0.3
3,178,881 + -0.0
3,178,896 + -0.3
3,178,896 + -3.0
3,179,048 - -0.3
3,179,097 - +0.2
3,179,124 + +0.3
3,179,154 + -0.4
3,179,154 + +3.1
3,179,322 + ABZR88_RS12930 0.14 +0.4
3,179,418 + ABZR88_RS12930 0.17 -0.0

Or see this region's nucleotide sequence