Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07270

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07260 and ABZR88_RS07265 overlap by 4 nucleotidesABZR88_RS07265 and ABZR88_RS07270 are separated by 14 nucleotidesABZR88_RS07270 and ABZR88_RS07275 are separated by 1 nucleotidesABZR88_RS07275 and ABZR88_RS07280 are separated by 30 nucleotides ABZR88_RS07260: ABZR88_RS07260 - alginate lyase family protein, at 1,797,972 to 1,799,036 _RS07260 ABZR88_RS07265: ABZR88_RS07265 - family 16 glycosylhydrolase, at 1,799,033 to 1,799,905 _RS07265 ABZR88_RS07270: ABZR88_RS07270 - glycoside hydrolase family 105 protein, at 1,799,920 to 1,801,056 _RS07270 ABZR88_RS07275: ABZR88_RS07275 - GDSL-type esterase/lipase family protein, at 1,801,058 to 1,801,729 _RS07275 ABZR88_RS07280: ABZR88_RS07280 - polysaccharide deacetylase family protein, at 1,801,760 to 1,802,791 _RS07280 Position (kb) 1799 1800 1801 1802Strain fitness (log2 ratio) -1 0 1 2 3at 1798.933 kb on - strandat 1798.975 kb on - strandat 1798.986 kb on + strandat 1799.015 kb on + strandat 1799.016 kb on - strandat 1799.330 kb on + strand, within ABZR88_RS07265at 1799.467 kb on + strand, within ABZR88_RS07265at 1799.710 kb on + strand, within ABZR88_RS07265at 1799.723 kb on - strand, within ABZR88_RS07265at 1799.746 kb on - strand, within ABZR88_RS07265at 1799.880 kb on + strandat 1799.887 kb on - strandat 1799.913 kb on - strandat 1800.139 kb on - strand, within ABZR88_RS07270at 1800.236 kb on - strand, within ABZR88_RS07270at 1800.247 kb on + strand, within ABZR88_RS07270at 1800.251 kb on - strand, within ABZR88_RS07270at 1800.256 kb on - strand, within ABZR88_RS07270at 1800.298 kb on - strand, within ABZR88_RS07270at 1800.339 kb on + strand, within ABZR88_RS07270at 1800.473 kb on - strand, within ABZR88_RS07270at 1800.473 kb on - strand, within ABZR88_RS07270at 1800.494 kb on + strand, within ABZR88_RS07270at 1800.714 kb on + strand, within ABZR88_RS07270at 1800.898 kb on - strand, within ABZR88_RS07270at 1800.935 kb on + strand, within ABZR88_RS07270at 1801.118 kb on + strandat 1801.118 kb on + strandat 1801.118 kb on + strandat 1801.178 kb on - strand, within ABZR88_RS07275at 1801.265 kb on + strand, within ABZR88_RS07275at 1801.265 kb on + strand, within ABZR88_RS07275at 1801.266 kb on - strand, within ABZR88_RS07275at 1801.266 kb on - strand, within ABZR88_RS07275at 1801.367 kb on + strand, within ABZR88_RS07275at 1801.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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1,798,933 - +0.2
1,798,975 - -1.3
1,798,986 + -0.6
1,799,015 + -0.5
1,799,016 - -0.5
1,799,330 + ABZR88_RS07265 0.34 +0.0
1,799,467 + ABZR88_RS07265 0.50 -1.1
1,799,710 + ABZR88_RS07265 0.78 -0.0
1,799,723 - ABZR88_RS07265 0.79 +1.2
1,799,746 - ABZR88_RS07265 0.82 -0.5
1,799,880 + +0.7
1,799,887 - -0.3
1,799,913 - +0.7
1,800,139 - ABZR88_RS07270 0.19 +0.2
1,800,236 - ABZR88_RS07270 0.28 -0.1
1,800,247 + ABZR88_RS07270 0.29 -0.0
1,800,251 - ABZR88_RS07270 0.29 -0.1
1,800,256 - ABZR88_RS07270 0.30 +0.3
1,800,298 - ABZR88_RS07270 0.33 +0.1
1,800,339 + ABZR88_RS07270 0.37 +0.4
1,800,473 - ABZR88_RS07270 0.49 +0.1
1,800,473 - ABZR88_RS07270 0.49 +3.0
1,800,494 + ABZR88_RS07270 0.50 -0.9
1,800,714 + ABZR88_RS07270 0.70 -0.6
1,800,898 - ABZR88_RS07270 0.86 +0.2
1,800,935 + ABZR88_RS07270 0.89 +0.1
1,801,118 + -0.4
1,801,118 + -0.1
1,801,118 + -0.0
1,801,178 - ABZR88_RS07275 0.18 +1.0
1,801,265 + ABZR88_RS07275 0.31 -0.5
1,801,265 + ABZR88_RS07275 0.31 -0.5
1,801,266 - ABZR88_RS07275 0.31 +1.1
1,801,266 - ABZR88_RS07275 0.31 +0.4
1,801,367 + ABZR88_RS07275 0.46 -0.2
1,801,668 + +0.3

Or see this region's nucleotide sequence