Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19850

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19840 and ABZR88_RS19845 are separated by 4 nucleotidesABZR88_RS19845 and ABZR88_RS19850 are separated by 171 nucleotidesABZR88_RS19850 and ABZR88_RS19855 are separated by 249 nucleotidesABZR88_RS19855 and ABZR88_RS19860 are separated by 15 nucleotides ABZR88_RS19840: ABZR88_RS19840 - PspC domain-containing protein, at 4,819,320 to 4,821,020 _RS19840 ABZR88_RS19845: ABZR88_RS19845 - hypothetical protein, at 4,821,025 to 4,821,231 _RS19845 ABZR88_RS19850: ABZR88_RS19850 - outer membrane beta-barrel family protein, at 4,821,403 to 4,823,868 _RS19850 ABZR88_RS19855: ABZR88_RS19855 - shikimate kinase, at 4,824,118 to 4,824,672 _RS19855 ABZR88_RS19860: ABZR88_RS19860 - ABC transporter permease, at 4,824,688 to 4,825,746 _RS19860 Position (kb) 4821 4822 4823 4824Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4820.494 kb on + strand, within ABZR88_RS19840at 4820.564 kb on + strand, within ABZR88_RS19840at 4820.565 kb on - strand, within ABZR88_RS19840at 4820.584 kb on + strand, within ABZR88_RS19840at 4820.585 kb on - strand, within ABZR88_RS19840at 4820.948 kb on + strandat 4821.102 kb on + strand, within ABZR88_RS19845at 4821.321 kb on + strandat 4821.376 kb on - strandat 4821.426 kb on - strandat 4821.582 kb on + strandat 4821.643 kb on + strandat 4821.779 kb on + strand, within ABZR88_RS19850at 4821.906 kb on + strand, within ABZR88_RS19850at 4821.907 kb on - strand, within ABZR88_RS19850at 4821.921 kb on + strand, within ABZR88_RS19850at 4821.922 kb on - strand, within ABZR88_RS19850at 4821.963 kb on + strand, within ABZR88_RS19850at 4822.117 kb on - strand, within ABZR88_RS19850at 4822.223 kb on + strand, within ABZR88_RS19850at 4822.459 kb on + strand, within ABZR88_RS19850at 4822.493 kb on - strand, within ABZR88_RS19850at 4822.612 kb on + strand, within ABZR88_RS19850at 4822.637 kb on - strand, within ABZR88_RS19850at 4822.743 kb on + strand, within ABZR88_RS19850at 4822.890 kb on + strand, within ABZR88_RS19850at 4823.127 kb on + strand, within ABZR88_RS19850at 4823.172 kb on + strand, within ABZR88_RS19850at 4823.173 kb on - strand, within ABZR88_RS19850at 4823.212 kb on - strand, within ABZR88_RS19850at 4823.269 kb on + strand, within ABZR88_RS19850at 4823.383 kb on - strand, within ABZR88_RS19850at 4823.499 kb on - strand, within ABZR88_RS19850at 4823.566 kb on + strand, within ABZR88_RS19850at 4823.720 kb on - strandat 4824.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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4,820,494 + ABZR88_RS19840 0.69 +2.7
4,820,564 + ABZR88_RS19840 0.73 +3.0
4,820,565 - ABZR88_RS19840 0.73 +0.4
4,820,584 + ABZR88_RS19840 0.74 +3.1
4,820,585 - ABZR88_RS19840 0.74 -0.2
4,820,948 + +5.7
4,821,102 + ABZR88_RS19845 0.37 +1.8
4,821,321 + +1.6
4,821,376 - -0.0
4,821,426 - +1.5
4,821,582 + +1.2
4,821,643 + +1.5
4,821,779 + ABZR88_RS19850 0.15 +2.3
4,821,906 + ABZR88_RS19850 0.20 -0.6
4,821,907 - ABZR88_RS19850 0.20 +0.5
4,821,921 + ABZR88_RS19850 0.21 +1.9
4,821,922 - ABZR88_RS19850 0.21 -0.0
4,821,963 + ABZR88_RS19850 0.23 +2.3
4,822,117 - ABZR88_RS19850 0.29 +0.4
4,822,223 + ABZR88_RS19850 0.33 +2.3
4,822,459 + ABZR88_RS19850 0.43 +2.6
4,822,493 - ABZR88_RS19850 0.44 +0.4
4,822,612 + ABZR88_RS19850 0.49 +2.7
4,822,637 - ABZR88_RS19850 0.50 +0.5
4,822,743 + ABZR88_RS19850 0.54 +2.2
4,822,890 + ABZR88_RS19850 0.60 +0.5
4,823,127 + ABZR88_RS19850 0.70 +2.8
4,823,172 + ABZR88_RS19850 0.72 +3.1
4,823,173 - ABZR88_RS19850 0.72 +0.5
4,823,212 - ABZR88_RS19850 0.73 +0.4
4,823,269 + ABZR88_RS19850 0.76 +2.1
4,823,383 - ABZR88_RS19850 0.80 -0.3
4,823,499 - ABZR88_RS19850 0.85 +1.2
4,823,566 + ABZR88_RS19850 0.88 +1.4
4,823,720 - +0.5
4,824,109 + +1.5

Or see this region's nucleotide sequence