Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19840 and ABZR88_RS19845 are separated by 4 nucleotides ABZR88_RS19845 and ABZR88_RS19850 are separated by 171 nucleotides ABZR88_RS19850 and ABZR88_RS19855 are separated by 249 nucleotides ABZR88_RS19855 and ABZR88_RS19860 are separated by 15 nucleotides
ABZR88_RS19840: ABZR88_RS19840 - PspC domain-containing protein, at 4,819,320 to 4,821,020
_RS19840
ABZR88_RS19845: ABZR88_RS19845 - hypothetical protein, at 4,821,025 to 4,821,231
_RS19845
ABZR88_RS19850: ABZR88_RS19850 - outer membrane beta-barrel family protein, at 4,821,403 to 4,823,868
_RS19850
ABZR88_RS19855: ABZR88_RS19855 - shikimate kinase, at 4,824,118 to 4,824,672
_RS19855
ABZR88_RS19860: ABZR88_RS19860 - ABC transporter permease, at 4,824,688 to 4,825,746
_RS19860
Position (kb)
4821
4822
4823
4824 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 4820.494 kb on + strand, within ABZR88_RS19840 at 4820.564 kb on + strand, within ABZR88_RS19840 at 4820.565 kb on - strand, within ABZR88_RS19840 at 4820.584 kb on + strand, within ABZR88_RS19840 at 4820.585 kb on - strand, within ABZR88_RS19840 at 4820.948 kb on + strand at 4821.102 kb on + strand, within ABZR88_RS19845 at 4821.321 kb on + strand at 4821.376 kb on - strand at 4821.426 kb on - strand at 4821.582 kb on + strand at 4821.643 kb on + strand at 4821.779 kb on + strand, within ABZR88_RS19850 at 4821.906 kb on + strand, within ABZR88_RS19850 at 4821.907 kb on - strand, within ABZR88_RS19850 at 4821.921 kb on + strand, within ABZR88_RS19850 at 4821.922 kb on - strand, within ABZR88_RS19850 at 4821.963 kb on + strand, within ABZR88_RS19850 at 4822.117 kb on - strand, within ABZR88_RS19850 at 4822.223 kb on + strand, within ABZR88_RS19850 at 4822.459 kb on + strand, within ABZR88_RS19850 at 4822.493 kb on - strand, within ABZR88_RS19850 at 4822.612 kb on + strand, within ABZR88_RS19850 at 4822.637 kb on - strand, within ABZR88_RS19850 at 4822.743 kb on + strand, within ABZR88_RS19850 at 4822.890 kb on + strand, within ABZR88_RS19850 at 4823.127 kb on + strand, within ABZR88_RS19850 at 4823.172 kb on + strand, within ABZR88_RS19850 at 4823.173 kb on - strand, within ABZR88_RS19850 at 4823.212 kb on - strand, within ABZR88_RS19850 at 4823.269 kb on + strand, within ABZR88_RS19850 at 4823.383 kb on - strand, within ABZR88_RS19850 at 4823.499 kb on - strand, within ABZR88_RS19850 at 4823.566 kb on + strand, within ABZR88_RS19850 at 4823.720 kb on - strand at 4824.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 4,820,494 + ABZR88_RS19840 0.69 +2.7 4,820,564 + ABZR88_RS19840 0.73 +3.0 4,820,565 - ABZR88_RS19840 0.73 +0.4 4,820,584 + ABZR88_RS19840 0.74 +3.1 4,820,585 - ABZR88_RS19840 0.74 -0.2 4,820,948 + +5.7 4,821,102 + ABZR88_RS19845 0.37 +1.8 4,821,321 + +1.6 4,821,376 - -0.0 4,821,426 - +1.5 4,821,582 + +1.2 4,821,643 + +1.5 4,821,779 + ABZR88_RS19850 0.15 +2.3 4,821,906 + ABZR88_RS19850 0.20 -0.6 4,821,907 - ABZR88_RS19850 0.20 +0.5 4,821,921 + ABZR88_RS19850 0.21 +1.9 4,821,922 - ABZR88_RS19850 0.21 -0.0 4,821,963 + ABZR88_RS19850 0.23 +2.3 4,822,117 - ABZR88_RS19850 0.29 +0.4 4,822,223 + ABZR88_RS19850 0.33 +2.3 4,822,459 + ABZR88_RS19850 0.43 +2.6 4,822,493 - ABZR88_RS19850 0.44 +0.4 4,822,612 + ABZR88_RS19850 0.49 +2.7 4,822,637 - ABZR88_RS19850 0.50 +0.5 4,822,743 + ABZR88_RS19850 0.54 +2.2 4,822,890 + ABZR88_RS19850 0.60 +0.5 4,823,127 + ABZR88_RS19850 0.70 +2.8 4,823,172 + ABZR88_RS19850 0.72 +3.1 4,823,173 - ABZR88_RS19850 0.72 +0.5 4,823,212 - ABZR88_RS19850 0.73 +0.4 4,823,269 + ABZR88_RS19850 0.76 +2.1 4,823,383 - ABZR88_RS19850 0.80 -0.3 4,823,499 - ABZR88_RS19850 0.85 +1.2 4,823,566 + ABZR88_RS19850 0.88 +1.4 4,823,720 - +0.5 4,824,109 + +1.5
Or see this region's nucleotide sequence