Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17405 and ABZR88_RS17410 are separated by 154 nucleotides ABZR88_RS17410 and ABZR88_RS17415 are separated by 305 nucleotides ABZR88_RS17415 and ABZR88_RS17420 are separated by 41 nucleotides
ABZR88_RS17405: ABZR88_RS17405 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 4,262,146 to 4,264,104
_RS17405
ABZR88_RS17410: ABZR88_RS17410 - OmpH family outer membrane protein, at 4,264,259 to 4,264,858
_RS17410
ABZR88_RS17415: ABZR88_RS17415 - nucleoside deaminase, at 4,265,164 to 4,265,631
_RS17415
ABZR88_RS17420: ABZR88_RS17420 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 4,265,673 to 4,266,221
_RS17420
Position (kb) 4264
4265 Strain fitness (log2 ratio) -1
0
1
2 at 4264.172 kb on + strand at 4264.184 kb on - strand at 4264.297 kb on - strand at 4264.373 kb on - strand, within ABZR88_RS17410 at 4264.401 kb on + strand, within ABZR88_RS17410 at 4264.406 kb on - strand, within ABZR88_RS17410 at 4264.471 kb on + strand, within ABZR88_RS17410 at 4264.471 kb on + strand, within ABZR88_RS17410 at 4264.625 kb on + strand, within ABZR88_RS17410 at 4264.685 kb on + strand, within ABZR88_RS17410 at 4264.743 kb on + strand, within ABZR88_RS17410 at 4264.927 kb on + strand at 4265.048 kb on + strand at 4265.162 kb on - strand at 4265.208 kb on + strand at 4265.287 kb on - strand, within ABZR88_RS17415 at 4265.367 kb on + strand, within ABZR88_RS17415 at 4265.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 4,264,172 + -0.4 4,264,184 - +0.0 4,264,297 - +1.0 4,264,373 - ABZR88_RS17410 0.19 +1.2 4,264,401 + ABZR88_RS17410 0.24 +1.6 4,264,406 - ABZR88_RS17410 0.24 +0.9 4,264,471 + ABZR88_RS17410 0.35 +1.2 4,264,471 + ABZR88_RS17410 0.35 +1.4 4,264,625 + ABZR88_RS17410 0.61 +1.1 4,264,685 + ABZR88_RS17410 0.71 +0.1 4,264,743 + ABZR88_RS17410 0.81 +2.2 4,264,927 + -0.8 4,265,048 + +0.3 4,265,162 - -0.6 4,265,208 + +0.0 4,265,287 - ABZR88_RS17415 0.26 +1.3 4,265,367 + ABZR88_RS17415 0.43 +0.2 4,265,617 - +1.6
Or see this region's nucleotide sequence