Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16255

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16250 and ABZR88_RS16255 are separated by 212 nucleotidesABZR88_RS16255 and ABZR88_RS16260 are separated by 316 nucleotides ABZR88_RS16250: ABZR88_RS16250 - M1 family metallopeptidase, at 3,997,779 to 4,000,256 _RS16250 ABZR88_RS16255: ABZR88_RS16255 - AI-2E family transporter, at 4,000,469 to 4,001,593 _RS16255 ABZR88_RS16260: ABZR88_RS16260 - glycine--tRNA ligase, at 4,001,910 to 4,003,388 _RS16260 Position (kb) 4000 4001 4002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3999.541 kb on - strand, within ABZR88_RS16250at 3999.587 kb on + strand, within ABZR88_RS16250at 3999.607 kb on + strand, within ABZR88_RS16250at 3999.772 kb on + strand, within ABZR88_RS16250at 3999.776 kb on + strand, within ABZR88_RS16250at 3999.810 kb on - strand, within ABZR88_RS16250at 4000.050 kb on + strandat 4000.420 kb on - strandat 4000.690 kb on + strand, within ABZR88_RS16255at 4000.695 kb on - strand, within ABZR88_RS16255at 4000.747 kb on + strand, within ABZR88_RS16255at 4000.750 kb on + strand, within ABZR88_RS16255at 4000.830 kb on - strand, within ABZR88_RS16255at 4000.832 kb on + strand, within ABZR88_RS16255at 4000.835 kb on - strand, within ABZR88_RS16255at 4000.895 kb on - strand, within ABZR88_RS16255at 4000.905 kb on - strand, within ABZR88_RS16255at 4000.914 kb on + strand, within ABZR88_RS16255at 4001.107 kb on + strand, within ABZR88_RS16255at 4001.108 kb on - strand, within ABZR88_RS16255at 4001.108 kb on - strand, within ABZR88_RS16255at 4001.108 kb on - strand, within ABZR88_RS16255at 4001.118 kb on - strand, within ABZR88_RS16255at 4001.136 kb on - strand, within ABZR88_RS16255at 4001.192 kb on - strand, within ABZR88_RS16255at 4001.251 kb on - strand, within ABZR88_RS16255at 4001.265 kb on - strand, within ABZR88_RS16255at 4001.265 kb on - strand, within ABZR88_RS16255at 4001.435 kb on - strand, within ABZR88_RS16255at 4001.510 kb on - strandat 4001.603 kb on - strandat 4001.605 kb on + strandat 4001.704 kb on + strandat 4001.705 kb on - strandat 4001.811 kb on + strandat 4001.858 kb on - strandat 4001.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,999,541 - ABZR88_RS16250 0.71 +1.1
3,999,587 + ABZR88_RS16250 0.73 -0.3
3,999,607 + ABZR88_RS16250 0.74 -1.1
3,999,772 + ABZR88_RS16250 0.80 -0.7
3,999,776 + ABZR88_RS16250 0.81 -0.5
3,999,810 - ABZR88_RS16250 0.82 -1.4
4,000,050 + +0.7
4,000,420 - -1.0
4,000,690 + ABZR88_RS16255 0.20 +1.7
4,000,695 - ABZR88_RS16255 0.20 -0.1
4,000,747 + ABZR88_RS16255 0.25 +1.4
4,000,750 + ABZR88_RS16255 0.25 +2.0
4,000,830 - ABZR88_RS16255 0.32 +0.9
4,000,832 + ABZR88_RS16255 0.32 +3.5
4,000,835 - ABZR88_RS16255 0.33 +1.3
4,000,895 - ABZR88_RS16255 0.38 +1.7
4,000,905 - ABZR88_RS16255 0.39 +2.0
4,000,914 + ABZR88_RS16255 0.40 +2.0
4,001,107 + ABZR88_RS16255 0.57 +1.4
4,001,108 - ABZR88_RS16255 0.57 +2.0
4,001,108 - ABZR88_RS16255 0.57 +3.1
4,001,108 - ABZR88_RS16255 0.57 +1.2
4,001,118 - ABZR88_RS16255 0.58 +1.5
4,001,136 - ABZR88_RS16255 0.59 +1.1
4,001,192 - ABZR88_RS16255 0.64 +1.0
4,001,251 - ABZR88_RS16255 0.70 +0.5
4,001,265 - ABZR88_RS16255 0.71 -1.5
4,001,265 - ABZR88_RS16255 0.71 +0.4
4,001,435 - ABZR88_RS16255 0.86 +0.8
4,001,510 - +1.6
4,001,603 - +0.1
4,001,605 + -0.0
4,001,704 + -2.3
4,001,705 - +1.0
4,001,811 + -2.9
4,001,858 - -1.2
4,001,882 - -1.7

Or see this region's nucleotide sequence