Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16250 and ABZR88_RS16255 are separated by 212 nucleotides ABZR88_RS16255 and ABZR88_RS16260 are separated by 316 nucleotides
ABZR88_RS16250: ABZR88_RS16250 - M1 family metallopeptidase, at 3,997,779 to 4,000,256
_RS16250
ABZR88_RS16255: ABZR88_RS16255 - AI-2E family transporter, at 4,000,469 to 4,001,593
_RS16255
ABZR88_RS16260: ABZR88_RS16260 - glycine--tRNA ligase, at 4,001,910 to 4,003,388
_RS16260
Position (kb)
4000
4001
4002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3999.541 kb on - strand, within ABZR88_RS16250 at 3999.587 kb on + strand, within ABZR88_RS16250 at 3999.607 kb on + strand, within ABZR88_RS16250 at 3999.772 kb on + strand, within ABZR88_RS16250 at 3999.776 kb on + strand, within ABZR88_RS16250 at 3999.810 kb on - strand, within ABZR88_RS16250 at 4000.050 kb on + strand at 4000.420 kb on - strand at 4000.690 kb on + strand, within ABZR88_RS16255 at 4000.695 kb on - strand, within ABZR88_RS16255 at 4000.747 kb on + strand, within ABZR88_RS16255 at 4000.750 kb on + strand, within ABZR88_RS16255 at 4000.830 kb on - strand, within ABZR88_RS16255 at 4000.832 kb on + strand, within ABZR88_RS16255 at 4000.835 kb on - strand, within ABZR88_RS16255 at 4000.895 kb on - strand, within ABZR88_RS16255 at 4000.905 kb on - strand, within ABZR88_RS16255 at 4000.914 kb on + strand, within ABZR88_RS16255 at 4001.107 kb on + strand, within ABZR88_RS16255 at 4001.108 kb on - strand, within ABZR88_RS16255 at 4001.108 kb on - strand, within ABZR88_RS16255 at 4001.108 kb on - strand, within ABZR88_RS16255 at 4001.118 kb on - strand, within ABZR88_RS16255 at 4001.136 kb on - strand, within ABZR88_RS16255 at 4001.192 kb on - strand, within ABZR88_RS16255 at 4001.251 kb on - strand, within ABZR88_RS16255 at 4001.265 kb on - strand, within ABZR88_RS16255 at 4001.265 kb on - strand, within ABZR88_RS16255 at 4001.435 kb on - strand, within ABZR88_RS16255 at 4001.510 kb on - strand at 4001.603 kb on - strand at 4001.605 kb on + strand at 4001.704 kb on + strand at 4001.705 kb on - strand at 4001.811 kb on + strand at 4001.858 kb on - strand at 4001.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,999,541 - ABZR88_RS16250 0.71 +1.1 3,999,587 + ABZR88_RS16250 0.73 -0.3 3,999,607 + ABZR88_RS16250 0.74 -1.1 3,999,772 + ABZR88_RS16250 0.80 -0.7 3,999,776 + ABZR88_RS16250 0.81 -0.5 3,999,810 - ABZR88_RS16250 0.82 -1.4 4,000,050 + +0.7 4,000,420 - -1.0 4,000,690 + ABZR88_RS16255 0.20 +1.7 4,000,695 - ABZR88_RS16255 0.20 -0.1 4,000,747 + ABZR88_RS16255 0.25 +1.4 4,000,750 + ABZR88_RS16255 0.25 +2.0 4,000,830 - ABZR88_RS16255 0.32 +0.9 4,000,832 + ABZR88_RS16255 0.32 +3.5 4,000,835 - ABZR88_RS16255 0.33 +1.3 4,000,895 - ABZR88_RS16255 0.38 +1.7 4,000,905 - ABZR88_RS16255 0.39 +2.0 4,000,914 + ABZR88_RS16255 0.40 +2.0 4,001,107 + ABZR88_RS16255 0.57 +1.4 4,001,108 - ABZR88_RS16255 0.57 +2.0 4,001,108 - ABZR88_RS16255 0.57 +3.1 4,001,108 - ABZR88_RS16255 0.57 +1.2 4,001,118 - ABZR88_RS16255 0.58 +1.5 4,001,136 - ABZR88_RS16255 0.59 +1.1 4,001,192 - ABZR88_RS16255 0.64 +1.0 4,001,251 - ABZR88_RS16255 0.70 +0.5 4,001,265 - ABZR88_RS16255 0.71 -1.5 4,001,265 - ABZR88_RS16255 0.71 +0.4 4,001,435 - ABZR88_RS16255 0.86 +0.8 4,001,510 - +1.6 4,001,603 - +0.1 4,001,605 + -0.0 4,001,704 + -2.3 4,001,705 - +1.0 4,001,811 + -2.9 4,001,858 - -1.2 4,001,882 - -1.7
Or see this region's nucleotide sequence