Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16210

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16200 and ABZR88_RS16205 are separated by 48 nucleotidesABZR88_RS16205 and ABZR88_RS16210 are separated by 231 nucleotidesABZR88_RS16210 and ABZR88_RS16215 are separated by 98 nucleotidesABZR88_RS16215 and ABZR88_RS16220 are separated by 28 nucleotidesABZR88_RS16220 and ABZR88_RS16225 are separated by 152 nucleotides ABZR88_RS16200: ABZR88_RS16200 - MFS transporter, at 3,987,823 to 3,989,181 _RS16200 ABZR88_RS16205: ABZR88_RS16205 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 3,989,230 to 3,989,889 _RS16205 ABZR88_RS16210: ABZR88_RS16210 - sugar kinase, at 3,990,121 to 3,991,146 _RS16210 ABZR88_RS16215: ABZR88_RS16215 - hypothetical protein, at 3,991,245 to 3,991,442 _RS16215 ABZR88_RS16220: ABZR88_RS16220 - YhcH/YjgK/YiaL family protein, at 3,991,471 to 3,991,920 _RS16220 ABZR88_RS16225: ABZR88_RS16225 - GIY-YIG nuclease family protein, at 3,992,073 to 3,992,228 _RS16225 Position (kb) 3990 3991 3992Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3989.212 kb on + strandat 3989.215 kb on - strandat 3989.314 kb on - strand, within ABZR88_RS16205at 3989.437 kb on - strand, within ABZR88_RS16205at 3989.535 kb on + strand, within ABZR88_RS16205at 3989.535 kb on + strand, within ABZR88_RS16205at 3989.582 kb on - strand, within ABZR88_RS16205at 3989.756 kb on + strand, within ABZR88_RS16205at 3989.783 kb on + strand, within ABZR88_RS16205at 3989.902 kb on - strandat 3989.902 kb on - strandat 3989.957 kb on + strandat 3990.030 kb on + strandat 3990.319 kb on - strand, within ABZR88_RS16210at 3990.606 kb on + strand, within ABZR88_RS16210at 3990.665 kb on + strand, within ABZR88_RS16210at 3990.843 kb on + strand, within ABZR88_RS16210at 3991.169 kb on - strandat 3991.239 kb on - strandat 3991.440 kb on + strandat 3991.760 kb on - strand, within ABZR88_RS16220at 3991.781 kb on + strand, within ABZR88_RS16220at 3991.781 kb on + strand, within ABZR88_RS16220at 3991.782 kb on - strand, within ABZR88_RS16220

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,989,212 + -1.9
3,989,215 - +0.5
3,989,314 - ABZR88_RS16205 0.13 -4.5
3,989,437 - ABZR88_RS16205 0.31 -4.7
3,989,535 + ABZR88_RS16205 0.46 -3.5
3,989,535 + ABZR88_RS16205 0.46 -2.6
3,989,582 - ABZR88_RS16205 0.53 -0.3
3,989,756 + ABZR88_RS16205 0.80 -4.2
3,989,783 + ABZR88_RS16205 0.84 -0.9
3,989,902 - +1.1
3,989,902 - +1.1
3,989,957 + -0.2
3,990,030 + -0.5
3,990,319 - ABZR88_RS16210 0.19 -1.9
3,990,606 + ABZR88_RS16210 0.47 +0.5
3,990,665 + ABZR88_RS16210 0.53 +0.1
3,990,843 + ABZR88_RS16210 0.70 -2.7
3,991,169 - +1.0
3,991,239 - -0.7
3,991,440 + -1.6
3,991,760 - ABZR88_RS16220 0.64 +0.3
3,991,781 + ABZR88_RS16220 0.69 +2.4
3,991,781 + ABZR88_RS16220 0.69 +1.4
3,991,782 - ABZR88_RS16220 0.69 +2.8

Or see this region's nucleotide sequence