Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16200 and ABZR88_RS16205 are separated by 48 nucleotides ABZR88_RS16205 and ABZR88_RS16210 are separated by 231 nucleotides ABZR88_RS16210 and ABZR88_RS16215 are separated by 98 nucleotides ABZR88_RS16215 and ABZR88_RS16220 are separated by 28 nucleotides ABZR88_RS16220 and ABZR88_RS16225 are separated by 152 nucleotides
ABZR88_RS16200: ABZR88_RS16200 - MFS transporter, at 3,987,823 to 3,989,181
_RS16200
ABZR88_RS16205: ABZR88_RS16205 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 3,989,230 to 3,989,889
_RS16205
ABZR88_RS16210: ABZR88_RS16210 - sugar kinase, at 3,990,121 to 3,991,146
_RS16210
ABZR88_RS16215: ABZR88_RS16215 - hypothetical protein, at 3,991,245 to 3,991,442
_RS16215
ABZR88_RS16220: ABZR88_RS16220 - YhcH/YjgK/YiaL family protein, at 3,991,471 to 3,991,920
_RS16220
ABZR88_RS16225: ABZR88_RS16225 - GIY-YIG nuclease family protein, at 3,992,073 to 3,992,228
_RS16225
Position (kb)
3990
3991
3992 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3989.212 kb on + strand at 3989.215 kb on - strand at 3989.314 kb on - strand, within ABZR88_RS16205 at 3989.437 kb on - strand, within ABZR88_RS16205 at 3989.535 kb on + strand, within ABZR88_RS16205 at 3989.535 kb on + strand, within ABZR88_RS16205 at 3989.582 kb on - strand, within ABZR88_RS16205 at 3989.756 kb on + strand, within ABZR88_RS16205 at 3989.783 kb on + strand, within ABZR88_RS16205 at 3989.902 kb on - strand at 3989.902 kb on - strand at 3989.957 kb on + strand at 3990.030 kb on + strand at 3990.319 kb on - strand, within ABZR88_RS16210 at 3990.606 kb on + strand, within ABZR88_RS16210 at 3990.665 kb on + strand, within ABZR88_RS16210 at 3990.843 kb on + strand, within ABZR88_RS16210 at 3991.169 kb on - strand at 3991.239 kb on - strand at 3991.440 kb on + strand at 3991.760 kb on - strand, within ABZR88_RS16220 at 3991.781 kb on + strand, within ABZR88_RS16220 at 3991.781 kb on + strand, within ABZR88_RS16220 at 3991.782 kb on - strand, within ABZR88_RS16220
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,989,212 + -1.9 3,989,215 - +0.5 3,989,314 - ABZR88_RS16205 0.13 -4.5 3,989,437 - ABZR88_RS16205 0.31 -4.7 3,989,535 + ABZR88_RS16205 0.46 -3.5 3,989,535 + ABZR88_RS16205 0.46 -2.6 3,989,582 - ABZR88_RS16205 0.53 -0.3 3,989,756 + ABZR88_RS16205 0.80 -4.2 3,989,783 + ABZR88_RS16205 0.84 -0.9 3,989,902 - +1.1 3,989,902 - +1.1 3,989,957 + -0.2 3,990,030 + -0.5 3,990,319 - ABZR88_RS16210 0.19 -1.9 3,990,606 + ABZR88_RS16210 0.47 +0.5 3,990,665 + ABZR88_RS16210 0.53 +0.1 3,990,843 + ABZR88_RS16210 0.70 -2.7 3,991,169 - +1.0 3,991,239 - -0.7 3,991,440 + -1.6 3,991,760 - ABZR88_RS16220 0.64 +0.3 3,991,781 + ABZR88_RS16220 0.69 +2.4 3,991,781 + ABZR88_RS16220 0.69 +1.4 3,991,782 - ABZR88_RS16220 0.69 +2.8
Or see this region's nucleotide sequence