Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15845 and ABZR88_RS15850 are separated by 8 nucleotides ABZR88_RS15850 and ABZR88_RS15855 are separated by 4 nucleotides ABZR88_RS15855 and ABZR88_RS15860 are separated by 124 nucleotides
ABZR88_RS15845: ABZR88_RS15845 - alpha/beta fold hydrolase, at 3,910,121 to 3,910,879
_RS15845
ABZR88_RS15850: ABZR88_RS15850 - CBS domain-containing protein, at 3,910,888 to 3,911,550
_RS15850
ABZR88_RS15855: ABZR88_RS15855 - NAD kinase, at 3,911,555 to 3,912,433
_RS15855
ABZR88_RS15860: ABZR88_RS15860 - DUF6089 family protein, at 3,912,558 to 3,913,418
_RS15860
Position (kb)
3911
3912
3913 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3910.878 kb on - strand at 3910.946 kb on + strand at 3910.982 kb on + strand, within ABZR88_RS15850 at 3910.983 kb on - strand, within ABZR88_RS15850 at 3911.128 kb on + strand, within ABZR88_RS15850 at 3911.185 kb on - strand, within ABZR88_RS15850 at 3911.185 kb on - strand, within ABZR88_RS15850 at 3911.427 kb on - strand, within ABZR88_RS15850 at 3911.536 kb on + strand at 3911.546 kb on + strand at 3912.492 kb on + strand at 3912.539 kb on - strand at 3912.583 kb on - strand at 3912.583 kb on - strand at 3912.590 kb on - strand at 3912.789 kb on - strand, within ABZR88_RS15860 at 3912.789 kb on - strand, within ABZR88_RS15860 at 3912.821 kb on + strand, within ABZR88_RS15860 at 3912.954 kb on + strand, within ABZR88_RS15860 at 3913.147 kb on - strand, within ABZR88_RS15860 at 3913.199 kb on - strand, within ABZR88_RS15860 at 3913.365 kb on + strand at 3913.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,910,878 - -2.2 3,910,946 + +0.6 3,910,982 + ABZR88_RS15850 0.14 -0.9 3,910,983 - ABZR88_RS15850 0.14 -2.0 3,911,128 + ABZR88_RS15850 0.36 -2.1 3,911,185 - ABZR88_RS15850 0.45 +0.6 3,911,185 - ABZR88_RS15850 0.45 +0.3 3,911,427 - ABZR88_RS15850 0.81 -2.0 3,911,536 + +0.2 3,911,546 + -0.1 3,912,492 + +1.2 3,912,539 - +1.3 3,912,583 - +0.2 3,912,583 - +0.2 3,912,590 - +0.8 3,912,789 - ABZR88_RS15860 0.27 -1.9 3,912,789 - ABZR88_RS15860 0.27 -1.4 3,912,821 + ABZR88_RS15860 0.31 +0.2 3,912,954 + ABZR88_RS15860 0.46 -0.1 3,913,147 - ABZR88_RS15860 0.68 -1.0 3,913,199 - ABZR88_RS15860 0.74 -1.8 3,913,365 + +3.2 3,913,410 + -0.6
Or see this region's nucleotide sequence