Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15855

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15845 and ABZR88_RS15850 are separated by 8 nucleotidesABZR88_RS15850 and ABZR88_RS15855 are separated by 4 nucleotidesABZR88_RS15855 and ABZR88_RS15860 are separated by 124 nucleotides ABZR88_RS15845: ABZR88_RS15845 - alpha/beta fold hydrolase, at 3,910,121 to 3,910,879 _RS15845 ABZR88_RS15850: ABZR88_RS15850 - CBS domain-containing protein, at 3,910,888 to 3,911,550 _RS15850 ABZR88_RS15855: ABZR88_RS15855 - NAD kinase, at 3,911,555 to 3,912,433 _RS15855 ABZR88_RS15860: ABZR88_RS15860 - DUF6089 family protein, at 3,912,558 to 3,913,418 _RS15860 Position (kb) 3911 3912 3913Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3910.878 kb on - strandat 3910.946 kb on + strandat 3910.982 kb on + strand, within ABZR88_RS15850at 3910.983 kb on - strand, within ABZR88_RS15850at 3911.128 kb on + strand, within ABZR88_RS15850at 3911.185 kb on - strand, within ABZR88_RS15850at 3911.185 kb on - strand, within ABZR88_RS15850at 3911.427 kb on - strand, within ABZR88_RS15850at 3911.536 kb on + strandat 3911.546 kb on + strandat 3912.492 kb on + strandat 3912.539 kb on - strandat 3912.583 kb on - strandat 3912.583 kb on - strandat 3912.590 kb on - strandat 3912.789 kb on - strand, within ABZR88_RS15860at 3912.789 kb on - strand, within ABZR88_RS15860at 3912.821 kb on + strand, within ABZR88_RS15860at 3912.954 kb on + strand, within ABZR88_RS15860at 3913.147 kb on - strand, within ABZR88_RS15860at 3913.199 kb on - strand, within ABZR88_RS15860at 3913.365 kb on + strandat 3913.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,910,878 - -2.2
3,910,946 + +0.6
3,910,982 + ABZR88_RS15850 0.14 -0.9
3,910,983 - ABZR88_RS15850 0.14 -2.0
3,911,128 + ABZR88_RS15850 0.36 -2.1
3,911,185 - ABZR88_RS15850 0.45 +0.6
3,911,185 - ABZR88_RS15850 0.45 +0.3
3,911,427 - ABZR88_RS15850 0.81 -2.0
3,911,536 + +0.2
3,911,546 + -0.1
3,912,492 + +1.2
3,912,539 - +1.3
3,912,583 - +0.2
3,912,583 - +0.2
3,912,590 - +0.8
3,912,789 - ABZR88_RS15860 0.27 -1.9
3,912,789 - ABZR88_RS15860 0.27 -1.4
3,912,821 + ABZR88_RS15860 0.31 +0.2
3,912,954 + ABZR88_RS15860 0.46 -0.1
3,913,147 - ABZR88_RS15860 0.68 -1.0
3,913,199 - ABZR88_RS15860 0.74 -1.8
3,913,365 + +3.2
3,913,410 + -0.6

Or see this region's nucleotide sequence