Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15685 and ABZR88_RS15690 are separated by 272 nucleotides ABZR88_RS15690 and ABZR88_RS15695 are separated by 47 nucleotides ABZR88_RS15695 and ABZR88_RS15700 are separated by 45 nucleotides ABZR88_RS15700 and ABZR88_RS15705 are separated by 10 nucleotides
ABZR88_RS15685: ABZR88_RS15685 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,873,711 to 3,875,234
_RS15685
ABZR88_RS15690: ABZR88_RS15690 - DUF4783 domain-containing protein, at 3,875,507 to 3,875,893
_RS15690
ABZR88_RS15695: ABZR88_RS15695 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,875,941 to 3,876,789
_RS15695
ABZR88_RS15700: ABZR88_RS15700 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 3,876,835 to 3,877,488
_RS15700
ABZR88_RS15705: ABZR88_RS15705 - M48 family metallopeptidase, at 3,877,499 to 3,878,299
_RS15705
Position (kb)
3875
3876
3877 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3875.245 kb on + strand at 3875.288 kb on + strand at 3875.292 kb on + strand at 3875.449 kb on + strand at 3875.470 kb on - strand at 3875.470 kb on - strand at 3875.506 kb on + strand at 3875.529 kb on + strand at 3875.530 kb on - strand at 3875.641 kb on - strand, within ABZR88_RS15690 at 3875.729 kb on - strand, within ABZR88_RS15690 at 3875.743 kb on - strand, within ABZR88_RS15690 at 3875.785 kb on - strand, within ABZR88_RS15690 at 3875.827 kb on - strand, within ABZR88_RS15690 at 3876.792 kb on - strand at 3877.723 kb on - strand, within ABZR88_RS15705
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,875,245 + +1.6 3,875,288 + +1.8 3,875,292 + -0.3 3,875,449 + +1.6 3,875,470 - +3.2 3,875,470 - -0.2 3,875,506 + -0.5 3,875,529 + +1.6 3,875,530 - +1.0 3,875,641 - ABZR88_RS15690 0.35 +1.0 3,875,729 - ABZR88_RS15690 0.57 +1.4 3,875,743 - ABZR88_RS15690 0.61 +1.1 3,875,785 - ABZR88_RS15690 0.72 +0.3 3,875,827 - ABZR88_RS15690 0.83 +2.3 3,876,792 - +4.2 3,877,723 - ABZR88_RS15705 0.28 +3.7
Or see this region's nucleotide sequence