Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15695

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15685 and ABZR88_RS15690 are separated by 272 nucleotidesABZR88_RS15690 and ABZR88_RS15695 are separated by 47 nucleotidesABZR88_RS15695 and ABZR88_RS15700 are separated by 45 nucleotidesABZR88_RS15700 and ABZR88_RS15705 are separated by 10 nucleotides ABZR88_RS15685: ABZR88_RS15685 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,873,711 to 3,875,234 _RS15685 ABZR88_RS15690: ABZR88_RS15690 - DUF4783 domain-containing protein, at 3,875,507 to 3,875,893 _RS15690 ABZR88_RS15695: ABZR88_RS15695 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,875,941 to 3,876,789 _RS15695 ABZR88_RS15700: ABZR88_RS15700 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 3,876,835 to 3,877,488 _RS15700 ABZR88_RS15705: ABZR88_RS15705 - M48 family metallopeptidase, at 3,877,499 to 3,878,299 _RS15705 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -1 0 1 2 3 4at 3875.245 kb on + strandat 3875.288 kb on + strandat 3875.292 kb on + strandat 3875.449 kb on + strandat 3875.470 kb on - strandat 3875.470 kb on - strandat 3875.506 kb on + strandat 3875.529 kb on + strandat 3875.530 kb on - strandat 3875.641 kb on - strand, within ABZR88_RS15690at 3875.729 kb on - strand, within ABZR88_RS15690at 3875.743 kb on - strand, within ABZR88_RS15690at 3875.785 kb on - strand, within ABZR88_RS15690at 3875.827 kb on - strand, within ABZR88_RS15690at 3876.792 kb on - strandat 3877.723 kb on - strand, within ABZR88_RS15705

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,875,245 + +1.6
3,875,288 + +1.8
3,875,292 + -0.3
3,875,449 + +1.6
3,875,470 - +3.2
3,875,470 - -0.2
3,875,506 + -0.5
3,875,529 + +1.6
3,875,530 - +1.0
3,875,641 - ABZR88_RS15690 0.35 +1.0
3,875,729 - ABZR88_RS15690 0.57 +1.4
3,875,743 - ABZR88_RS15690 0.61 +1.1
3,875,785 - ABZR88_RS15690 0.72 +0.3
3,875,827 - ABZR88_RS15690 0.83 +2.3
3,876,792 - +4.2
3,877,723 - ABZR88_RS15705 0.28 +3.7

Or see this region's nucleotide sequence