Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15320 and ABZR88_RS15325 are separated by 28 nucleotides ABZR88_RS15325 and ABZR88_RS15330 are separated by 555 nucleotides
ABZR88_RS15320: ABZR88_RS15320 - SDR family oxidoreductase, at 3,793,355 to 3,794,170
_RS15320
ABZR88_RS15325: ABZR88_RS15325 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 3,794,199 to 3,795,029
_RS15325
ABZR88_RS15330: ABZR88_RS15330 - hypothetical protein, at 3,795,585 to 3,795,848
_RS15330
Position (kb)
3794
3795
3796 Strain fitness (log2 ratio)
-2
-1
0
1 at 3793.209 kb on + strand at 3793.311 kb on - strand at 3793.647 kb on + strand, within ABZR88_RS15320 at 3793.696 kb on + strand, within ABZR88_RS15320 at 3793.802 kb on + strand, within ABZR88_RS15320 at 3793.847 kb on - strand, within ABZR88_RS15320 at 3793.847 kb on - strand, within ABZR88_RS15320 at 3793.879 kb on + strand, within ABZR88_RS15320 at 3794.381 kb on - strand, within ABZR88_RS15325 at 3794.381 kb on - strand, within ABZR88_RS15325 at 3794.381 kb on - strand, within ABZR88_RS15325 at 3794.433 kb on - strand, within ABZR88_RS15325 at 3794.530 kb on - strand, within ABZR88_RS15325 at 3794.540 kb on - strand, within ABZR88_RS15325 at 3794.595 kb on - strand, within ABZR88_RS15325 at 3794.715 kb on - strand, within ABZR88_RS15325 at 3794.723 kb on - strand, within ABZR88_RS15325 at 3794.775 kb on - strand, within ABZR88_RS15325 at 3794.897 kb on + strand, within ABZR88_RS15325 at 3794.897 kb on + strand, within ABZR88_RS15325 at 3794.994 kb on - strand at 3795.009 kb on + strand at 3795.062 kb on - strand at 3795.082 kb on + strand at 3795.128 kb on + strand at 3795.129 kb on - strand at 3795.224 kb on + strand at 3795.227 kb on - strand at 3795.595 kb on + strand at 3795.825 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,793,209 + -0.9 3,793,311 - -0.5 3,793,647 + ABZR88_RS15320 0.36 +0.1 3,793,696 + ABZR88_RS15320 0.42 +0.6 3,793,802 + ABZR88_RS15320 0.55 -1.2 3,793,847 - ABZR88_RS15320 0.60 -1.7 3,793,847 - ABZR88_RS15320 0.60 -1.5 3,793,879 + ABZR88_RS15320 0.64 +0.4 3,794,381 - ABZR88_RS15325 0.22 -0.7 3,794,381 - ABZR88_RS15325 0.22 +1.4 3,794,381 - ABZR88_RS15325 0.22 -0.8 3,794,433 - ABZR88_RS15325 0.28 -0.9 3,794,530 - ABZR88_RS15325 0.40 -0.8 3,794,540 - ABZR88_RS15325 0.41 -1.1 3,794,595 - ABZR88_RS15325 0.48 -0.4 3,794,715 - ABZR88_RS15325 0.62 -0.4 3,794,723 - ABZR88_RS15325 0.63 -0.1 3,794,775 - ABZR88_RS15325 0.69 -0.3 3,794,897 + ABZR88_RS15325 0.84 -0.6 3,794,897 + ABZR88_RS15325 0.84 -1.1 3,794,994 - -0.5 3,795,009 + -1.2 3,795,062 - -2.3 3,795,082 + -0.8 3,795,128 + -2.1 3,795,129 - -0.7 3,795,224 + -1.3 3,795,227 - -2.0 3,795,595 + -0.2 3,795,825 + +1.2
Or see this region's nucleotide sequence