Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15325

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15320 and ABZR88_RS15325 are separated by 28 nucleotidesABZR88_RS15325 and ABZR88_RS15330 are separated by 555 nucleotides ABZR88_RS15320: ABZR88_RS15320 - SDR family oxidoreductase, at 3,793,355 to 3,794,170 _RS15320 ABZR88_RS15325: ABZR88_RS15325 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 3,794,199 to 3,795,029 _RS15325 ABZR88_RS15330: ABZR88_RS15330 - hypothetical protein, at 3,795,585 to 3,795,848 _RS15330 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -2 -1 0 1at 3793.209 kb on + strandat 3793.311 kb on - strandat 3793.647 kb on + strand, within ABZR88_RS15320at 3793.696 kb on + strand, within ABZR88_RS15320at 3793.802 kb on + strand, within ABZR88_RS15320at 3793.847 kb on - strand, within ABZR88_RS15320at 3793.847 kb on - strand, within ABZR88_RS15320at 3793.879 kb on + strand, within ABZR88_RS15320at 3794.381 kb on - strand, within ABZR88_RS15325at 3794.381 kb on - strand, within ABZR88_RS15325at 3794.381 kb on - strand, within ABZR88_RS15325at 3794.433 kb on - strand, within ABZR88_RS15325at 3794.530 kb on - strand, within ABZR88_RS15325at 3794.540 kb on - strand, within ABZR88_RS15325at 3794.595 kb on - strand, within ABZR88_RS15325at 3794.715 kb on - strand, within ABZR88_RS15325at 3794.723 kb on - strand, within ABZR88_RS15325at 3794.775 kb on - strand, within ABZR88_RS15325at 3794.897 kb on + strand, within ABZR88_RS15325at 3794.897 kb on + strand, within ABZR88_RS15325at 3794.994 kb on - strandat 3795.009 kb on + strandat 3795.062 kb on - strandat 3795.082 kb on + strandat 3795.128 kb on + strandat 3795.129 kb on - strandat 3795.224 kb on + strandat 3795.227 kb on - strandat 3795.595 kb on + strandat 3795.825 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,793,209 + -0.9
3,793,311 - -0.5
3,793,647 + ABZR88_RS15320 0.36 +0.1
3,793,696 + ABZR88_RS15320 0.42 +0.6
3,793,802 + ABZR88_RS15320 0.55 -1.2
3,793,847 - ABZR88_RS15320 0.60 -1.7
3,793,847 - ABZR88_RS15320 0.60 -1.5
3,793,879 + ABZR88_RS15320 0.64 +0.4
3,794,381 - ABZR88_RS15325 0.22 -0.7
3,794,381 - ABZR88_RS15325 0.22 +1.4
3,794,381 - ABZR88_RS15325 0.22 -0.8
3,794,433 - ABZR88_RS15325 0.28 -0.9
3,794,530 - ABZR88_RS15325 0.40 -0.8
3,794,540 - ABZR88_RS15325 0.41 -1.1
3,794,595 - ABZR88_RS15325 0.48 -0.4
3,794,715 - ABZR88_RS15325 0.62 -0.4
3,794,723 - ABZR88_RS15325 0.63 -0.1
3,794,775 - ABZR88_RS15325 0.69 -0.3
3,794,897 + ABZR88_RS15325 0.84 -0.6
3,794,897 + ABZR88_RS15325 0.84 -1.1
3,794,994 - -0.5
3,795,009 + -1.2
3,795,062 - -2.3
3,795,082 + -0.8
3,795,128 + -2.1
3,795,129 - -0.7
3,795,224 + -1.3
3,795,227 - -2.0
3,795,595 + -0.2
3,795,825 + +1.2

Or see this region's nucleotide sequence