Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13305

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13300 and ABZR88_RS13305 are separated by 15 nucleotidesABZR88_RS13305 and ABZR88_RS13310 are separated by 137 nucleotides ABZR88_RS13300: ABZR88_RS13300 - glycoside hydrolase family 13 protein, at 3,291,949 to 3,293,802 _RS13300 ABZR88_RS13305: ABZR88_RS13305 - glycoside hydrolase family 31 protein, at 3,293,818 to 3,296,271 _RS13305 ABZR88_RS13310: ABZR88_RS13310 - SusE domain-containing protein, at 3,296,409 to 3,297,479 _RS13310 Position (kb) 3293 3294 3295 3296 3297Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3292.836 kb on - strand, within ABZR88_RS13300at 3292.880 kb on + strand, within ABZR88_RS13300at 3293.004 kb on - strand, within ABZR88_RS13300at 3293.096 kb on - strand, within ABZR88_RS13300at 3293.321 kb on + strand, within ABZR88_RS13300at 3293.321 kb on + strand, within ABZR88_RS13300at 3293.564 kb on - strand, within ABZR88_RS13300at 3293.717 kb on - strandat 3293.771 kb on - strandat 3293.773 kb on + strandat 3294.087 kb on + strand, within ABZR88_RS13305at 3294.180 kb on - strand, within ABZR88_RS13305at 3294.344 kb on + strand, within ABZR88_RS13305at 3294.452 kb on + strand, within ABZR88_RS13305at 3294.471 kb on + strand, within ABZR88_RS13305at 3294.525 kb on - strand, within ABZR88_RS13305at 3294.543 kb on - strand, within ABZR88_RS13305at 3294.694 kb on + strand, within ABZR88_RS13305at 3294.757 kb on + strand, within ABZR88_RS13305at 3295.057 kb on + strand, within ABZR88_RS13305at 3295.171 kb on - strand, within ABZR88_RS13305at 3295.181 kb on + strand, within ABZR88_RS13305at 3295.227 kb on - strand, within ABZR88_RS13305at 3295.238 kb on - strand, within ABZR88_RS13305at 3295.548 kb on + strand, within ABZR88_RS13305at 3295.669 kb on - strand, within ABZR88_RS13305at 3295.709 kb on + strand, within ABZR88_RS13305at 3295.750 kb on - strand, within ABZR88_RS13305at 3295.761 kb on + strand, within ABZR88_RS13305at 3296.102 kb on + strandat 3296.103 kb on - strandat 3296.159 kb on - strandat 3296.200 kb on - strandat 3296.339 kb on - strandat 3296.428 kb on + strandat 3296.475 kb on - strandat 3296.475 kb on - strandat 3296.695 kb on - strand, within ABZR88_RS13310at 3296.726 kb on + strand, within ABZR88_RS13310at 3296.905 kb on + strand, within ABZR88_RS13310at 3296.961 kb on + strand, within ABZR88_RS13310at 3297.005 kb on - strand, within ABZR88_RS13310at 3297.005 kb on - strand, within ABZR88_RS13310at 3297.043 kb on - strand, within ABZR88_RS13310at 3297.063 kb on - strand, within ABZR88_RS13310at 3297.082 kb on + strand, within ABZR88_RS13310at 3297.083 kb on - strand, within ABZR88_RS13310at 3297.176 kb on + strand, within ABZR88_RS13310

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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3,292,836 - ABZR88_RS13300 0.48 -1.8
3,292,880 + ABZR88_RS13300 0.50 +0.2
3,293,004 - ABZR88_RS13300 0.57 -0.5
3,293,096 - ABZR88_RS13300 0.62 -0.9
3,293,321 + ABZR88_RS13300 0.74 -0.7
3,293,321 + ABZR88_RS13300 0.74 -0.4
3,293,564 - ABZR88_RS13300 0.87 -1.1
3,293,717 - +0.0
3,293,771 - +0.2
3,293,773 + -0.2
3,294,087 + ABZR88_RS13305 0.11 -2.7
3,294,180 - ABZR88_RS13305 0.15 +0.2
3,294,344 + ABZR88_RS13305 0.21 -1.8
3,294,452 + ABZR88_RS13305 0.26 -0.4
3,294,471 + ABZR88_RS13305 0.27 -1.9
3,294,525 - ABZR88_RS13305 0.29 -0.3
3,294,543 - ABZR88_RS13305 0.30 -0.3
3,294,694 + ABZR88_RS13305 0.36 -1.4
3,294,757 + ABZR88_RS13305 0.38 +3.4
3,295,057 + ABZR88_RS13305 0.50 -0.8
3,295,171 - ABZR88_RS13305 0.55 -0.8
3,295,181 + ABZR88_RS13305 0.56 -0.5
3,295,227 - ABZR88_RS13305 0.57 -1.1
3,295,238 - ABZR88_RS13305 0.58 -1.2
3,295,548 + ABZR88_RS13305 0.70 +0.1
3,295,669 - ABZR88_RS13305 0.75 -0.4
3,295,709 + ABZR88_RS13305 0.77 -1.1
3,295,750 - ABZR88_RS13305 0.79 +0.3
3,295,761 + ABZR88_RS13305 0.79 +2.8
3,296,102 + -1.7
3,296,103 - -0.2
3,296,159 - -0.3
3,296,200 - +0.1
3,296,339 - +1.8
3,296,428 + -0.9
3,296,475 - -0.0
3,296,475 - -0.0
3,296,695 - ABZR88_RS13310 0.27 +1.8
3,296,726 + ABZR88_RS13310 0.30 -0.8
3,296,905 + ABZR88_RS13310 0.46 +1.1
3,296,961 + ABZR88_RS13310 0.52 -0.3
3,297,005 - ABZR88_RS13310 0.56 -0.4
3,297,005 - ABZR88_RS13310 0.56 +0.0
3,297,043 - ABZR88_RS13310 0.59 +0.6
3,297,063 - ABZR88_RS13310 0.61 +0.6
3,297,082 + ABZR88_RS13310 0.63 -0.5
3,297,083 - ABZR88_RS13310 0.63 +2.0
3,297,176 + ABZR88_RS13310 0.72 -1.8

Or see this region's nucleotide sequence