Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13300 and ABZR88_RS13305 are separated by 15 nucleotides ABZR88_RS13305 and ABZR88_RS13310 are separated by 137 nucleotides
ABZR88_RS13300: ABZR88_RS13300 - glycoside hydrolase family 13 protein, at 3,291,949 to 3,293,802
_RS13300
ABZR88_RS13305: ABZR88_RS13305 - glycoside hydrolase family 31 protein, at 3,293,818 to 3,296,271
_RS13305
ABZR88_RS13310: ABZR88_RS13310 - SusE domain-containing protein, at 3,296,409 to 3,297,479
_RS13310
Position (kb)
3293
3294
3295
3296
3297 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3292.836 kb on - strand, within ABZR88_RS13300 at 3292.880 kb on + strand, within ABZR88_RS13300 at 3293.004 kb on - strand, within ABZR88_RS13300 at 3293.096 kb on - strand, within ABZR88_RS13300 at 3293.321 kb on + strand, within ABZR88_RS13300 at 3293.321 kb on + strand, within ABZR88_RS13300 at 3293.564 kb on - strand, within ABZR88_RS13300 at 3293.717 kb on - strand at 3293.771 kb on - strand at 3293.773 kb on + strand at 3294.087 kb on + strand, within ABZR88_RS13305 at 3294.180 kb on - strand, within ABZR88_RS13305 at 3294.344 kb on + strand, within ABZR88_RS13305 at 3294.452 kb on + strand, within ABZR88_RS13305 at 3294.471 kb on + strand, within ABZR88_RS13305 at 3294.525 kb on - strand, within ABZR88_RS13305 at 3294.543 kb on - strand, within ABZR88_RS13305 at 3294.694 kb on + strand, within ABZR88_RS13305 at 3294.757 kb on + strand, within ABZR88_RS13305 at 3295.057 kb on + strand, within ABZR88_RS13305 at 3295.171 kb on - strand, within ABZR88_RS13305 at 3295.181 kb on + strand, within ABZR88_RS13305 at 3295.227 kb on - strand, within ABZR88_RS13305 at 3295.238 kb on - strand, within ABZR88_RS13305 at 3295.548 kb on + strand, within ABZR88_RS13305 at 3295.669 kb on - strand, within ABZR88_RS13305 at 3295.709 kb on + strand, within ABZR88_RS13305 at 3295.750 kb on - strand, within ABZR88_RS13305 at 3295.761 kb on + strand, within ABZR88_RS13305 at 3296.102 kb on + strand at 3296.103 kb on - strand at 3296.159 kb on - strand at 3296.200 kb on - strand at 3296.339 kb on - strand at 3296.428 kb on + strand at 3296.475 kb on - strand at 3296.475 kb on - strand at 3296.695 kb on - strand, within ABZR88_RS13310 at 3296.726 kb on + strand, within ABZR88_RS13310 at 3296.905 kb on + strand, within ABZR88_RS13310 at 3296.961 kb on + strand, within ABZR88_RS13310 at 3297.005 kb on - strand, within ABZR88_RS13310 at 3297.005 kb on - strand, within ABZR88_RS13310 at 3297.043 kb on - strand, within ABZR88_RS13310 at 3297.063 kb on - strand, within ABZR88_RS13310 at 3297.082 kb on + strand, within ABZR88_RS13310 at 3297.083 kb on - strand, within ABZR88_RS13310 at 3297.176 kb on + strand, within ABZR88_RS13310
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 3,292,836 - ABZR88_RS13300 0.48 -1.8 3,292,880 + ABZR88_RS13300 0.50 +0.2 3,293,004 - ABZR88_RS13300 0.57 -0.5 3,293,096 - ABZR88_RS13300 0.62 -0.9 3,293,321 + ABZR88_RS13300 0.74 -0.7 3,293,321 + ABZR88_RS13300 0.74 -0.4 3,293,564 - ABZR88_RS13300 0.87 -1.1 3,293,717 - +0.0 3,293,771 - +0.2 3,293,773 + -0.2 3,294,087 + ABZR88_RS13305 0.11 -2.7 3,294,180 - ABZR88_RS13305 0.15 +0.2 3,294,344 + ABZR88_RS13305 0.21 -1.8 3,294,452 + ABZR88_RS13305 0.26 -0.4 3,294,471 + ABZR88_RS13305 0.27 -1.9 3,294,525 - ABZR88_RS13305 0.29 -0.3 3,294,543 - ABZR88_RS13305 0.30 -0.3 3,294,694 + ABZR88_RS13305 0.36 -1.4 3,294,757 + ABZR88_RS13305 0.38 +3.4 3,295,057 + ABZR88_RS13305 0.50 -0.8 3,295,171 - ABZR88_RS13305 0.55 -0.8 3,295,181 + ABZR88_RS13305 0.56 -0.5 3,295,227 - ABZR88_RS13305 0.57 -1.1 3,295,238 - ABZR88_RS13305 0.58 -1.2 3,295,548 + ABZR88_RS13305 0.70 +0.1 3,295,669 - ABZR88_RS13305 0.75 -0.4 3,295,709 + ABZR88_RS13305 0.77 -1.1 3,295,750 - ABZR88_RS13305 0.79 +0.3 3,295,761 + ABZR88_RS13305 0.79 +2.8 3,296,102 + -1.7 3,296,103 - -0.2 3,296,159 - -0.3 3,296,200 - +0.1 3,296,339 - +1.8 3,296,428 + -0.9 3,296,475 - -0.0 3,296,475 - -0.0 3,296,695 - ABZR88_RS13310 0.27 +1.8 3,296,726 + ABZR88_RS13310 0.30 -0.8 3,296,905 + ABZR88_RS13310 0.46 +1.1 3,296,961 + ABZR88_RS13310 0.52 -0.3 3,297,005 - ABZR88_RS13310 0.56 -0.4 3,297,005 - ABZR88_RS13310 0.56 +0.0 3,297,043 - ABZR88_RS13310 0.59 +0.6 3,297,063 - ABZR88_RS13310 0.61 +0.6 3,297,082 + ABZR88_RS13310 0.63 -0.5 3,297,083 - ABZR88_RS13310 0.63 +2.0 3,297,176 + ABZR88_RS13310 0.72 -1.8
Or see this region's nucleotide sequence