Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09545

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09535 and ABZR88_RS09540 are separated by 84 nucleotidesABZR88_RS09540 and ABZR88_RS09545 are separated by 85 nucleotidesABZR88_RS09545 and ABZR88_RS09550 are separated by 673 nucleotidesABZR88_RS09550 and ABZR88_RS09555 are separated by 72 nucleotides ABZR88_RS09535: ABZR88_RS09535 - aminofutalosine synthase MqnE, at 2,386,737 to 2,387,930 _RS09535 ABZR88_RS09540: ABZR88_RS09540 - hypothetical protein, at 2,388,015 to 2,388,536 _RS09540 ABZR88_RS09545: ABZR88_RS09545 - PLP-dependent aspartate aminotransferase family protein, at 2,388,622 to 2,389,746 _RS09545 ABZR88_RS09550: ABZR88_RS09550 - hypothetical protein, at 2,390,420 to 2,390,602 _RS09550 ABZR88_RS09555: ABZR88_RS09555 - homoserine O-acetyltransferase, at 2,390,675 to 2,391,727 _RS09555 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2388.106 kb on - strand, within ABZR88_RS09540at 2388.306 kb on - strand, within ABZR88_RS09540at 2388.349 kb on - strand, within ABZR88_RS09540at 2388.389 kb on - strand, within ABZR88_RS09540at 2388.393 kb on + strand, within ABZR88_RS09540at 2388.396 kb on - strand, within ABZR88_RS09540at 2388.397 kb on + strand, within ABZR88_RS09540at 2388.480 kb on - strand, within ABZR88_RS09540at 2388.480 kb on - strand, within ABZR88_RS09540at 2388.553 kb on + strandat 2388.591 kb on - strandat 2388.615 kb on + strandat 2388.696 kb on + strandat 2388.700 kb on - strandat 2388.750 kb on + strand, within ABZR88_RS09545at 2388.750 kb on + strand, within ABZR88_RS09545at 2388.788 kb on + strand, within ABZR88_RS09545at 2388.788 kb on + strand, within ABZR88_RS09545at 2388.916 kb on + strand, within ABZR88_RS09545at 2388.917 kb on - strand, within ABZR88_RS09545at 2389.122 kb on - strand, within ABZR88_RS09545at 2389.239 kb on + strand, within ABZR88_RS09545at 2389.408 kb on + strand, within ABZR88_RS09545at 2389.531 kb on - strand, within ABZR88_RS09545at 2389.581 kb on + strand, within ABZR88_RS09545at 2389.608 kb on - strand, within ABZR88_RS09545at 2389.745 kb on - strandat 2389.745 kb on - strandat 2389.880 kb on - strandat 2389.953 kb on - strandat 2390.027 kb on - strandat 2390.060 kb on - strandat 2390.400 kb on + strandat 2390.455 kb on - strand, within ABZR88_RS09550at 2390.596 kb on + strandat 2390.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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2,388,106 - ABZR88_RS09540 0.17 +0.3
2,388,306 - ABZR88_RS09540 0.56 +0.5
2,388,349 - ABZR88_RS09540 0.64 -0.5
2,388,389 - ABZR88_RS09540 0.72 +0.6
2,388,393 + ABZR88_RS09540 0.72 +1.0
2,388,396 - ABZR88_RS09540 0.73 -0.6
2,388,397 + ABZR88_RS09540 0.73 +0.1
2,388,480 - ABZR88_RS09540 0.89 +0.1
2,388,480 - ABZR88_RS09540 0.89 +0.0
2,388,553 + -0.7
2,388,591 - +2.2
2,388,615 + -0.2
2,388,696 + -1.4
2,388,700 - +0.9
2,388,750 + ABZR88_RS09545 0.11 -1.7
2,388,750 + ABZR88_RS09545 0.11 -1.6
2,388,788 + ABZR88_RS09545 0.15 -0.8
2,388,788 + ABZR88_RS09545 0.15 -2.1
2,388,916 + ABZR88_RS09545 0.26 -1.5
2,388,917 - ABZR88_RS09545 0.26 -1.8
2,389,122 - ABZR88_RS09545 0.44 -1.5
2,389,239 + ABZR88_RS09545 0.55 -1.6
2,389,408 + ABZR88_RS09545 0.70 -2.4
2,389,531 - ABZR88_RS09545 0.81 -1.8
2,389,581 + ABZR88_RS09545 0.85 -1.8
2,389,608 - ABZR88_RS09545 0.88 -0.3
2,389,745 - -0.6
2,389,745 - +0.1
2,389,880 - -1.3
2,389,953 - +0.2
2,390,027 - -0.8
2,390,060 - -3.6
2,390,400 + -1.5
2,390,455 - ABZR88_RS09550 0.19 -1.7
2,390,596 + -1.9
2,390,691 - -1.9

Or see this region's nucleotide sequence