Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08890 and ABZR88_RS08895 are separated by 180 nucleotides ABZR88_RS08895 and ABZR88_RS08900 are separated by 188 nucleotides
ABZR88_RS08890: ABZR88_RS08890 - glycosyltransferase family 4 protein, at 2,237,812 to 2,238,954
_RS08890
ABZR88_RS08895: ABZR88_RS08895 - polysaccharide lyase family 1 protein, at 2,239,135 to 2,240,568
_RS08895
ABZR88_RS08900: ABZR88_RS08900 - NAD-dependent epimerase, at 2,240,757 to 2,241,845
_RS08900
Position (kb)
2239
2240
2241 Strain fitness (log2 ratio)
-2
-1
0
1 at 2238.148 kb on + strand, within ABZR88_RS08890 at 2238.303 kb on - strand, within ABZR88_RS08890 at 2238.306 kb on - strand, within ABZR88_RS08890 at 2238.470 kb on + strand, within ABZR88_RS08890 at 2238.600 kb on + strand, within ABZR88_RS08890 at 2238.666 kb on + strand, within ABZR88_RS08890 at 2238.760 kb on - strand, within ABZR88_RS08890 at 2238.835 kb on - strand, within ABZR88_RS08890 at 2238.854 kb on - strand at 2238.967 kb on + strand at 2238.993 kb on - strand at 2239.082 kb on + strand at 2239.211 kb on + strand at 2239.342 kb on - strand, within ABZR88_RS08895 at 2239.427 kb on + strand, within ABZR88_RS08895 at 2239.488 kb on - strand, within ABZR88_RS08895 at 2239.511 kb on - strand, within ABZR88_RS08895 at 2239.526 kb on - strand, within ABZR88_RS08895 at 2239.527 kb on + strand, within ABZR88_RS08895 at 2239.600 kb on + strand, within ABZR88_RS08895 at 2239.636 kb on - strand, within ABZR88_RS08895 at 2239.771 kb on - strand, within ABZR88_RS08895 at 2239.995 kb on + strand, within ABZR88_RS08895 at 2239.995 kb on + strand, within ABZR88_RS08895 at 2240.130 kb on + strand, within ABZR88_RS08895 at 2240.132 kb on + strand, within ABZR88_RS08895 at 2240.132 kb on + strand, within ABZR88_RS08895 at 2240.132 kb on + strand, within ABZR88_RS08895 at 2240.133 kb on - strand, within ABZR88_RS08895 at 2240.166 kb on + strand, within ABZR88_RS08895 at 2240.186 kb on + strand, within ABZR88_RS08895 at 2240.221 kb on - strand, within ABZR88_RS08895 at 2240.296 kb on - strand, within ABZR88_RS08895 at 2240.569 kb on + strand at 2240.769 kb on + strand at 2240.813 kb on + strand at 2241.024 kb on - strand, within ABZR88_RS08900 at 2241.132 kb on - strand, within ABZR88_RS08900 at 2241.212 kb on + strand, within ABZR88_RS08900 at 2241.253 kb on + strand, within ABZR88_RS08900 at 2241.304 kb on + strand, within ABZR88_RS08900 at 2241.371 kb on + strand, within ABZR88_RS08900 at 2241.371 kb on + strand, within ABZR88_RS08900 at 2241.432 kb on + strand, within ABZR88_RS08900 at 2241.486 kb on + strand, within ABZR88_RS08900 at 2241.486 kb on + strand, within ABZR88_RS08900 at 2241.529 kb on + strand, within ABZR88_RS08900
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 2,238,148 + ABZR88_RS08890 0.29 -0.0 2,238,303 - ABZR88_RS08890 0.43 -0.2 2,238,306 - ABZR88_RS08890 0.43 -0.2 2,238,470 + ABZR88_RS08890 0.58 -1.2 2,238,600 + ABZR88_RS08890 0.69 +0.2 2,238,666 + ABZR88_RS08890 0.75 -1.1 2,238,760 - ABZR88_RS08890 0.83 +0.4 2,238,835 - ABZR88_RS08890 0.90 -0.4 2,238,854 - +0.9 2,238,967 + -0.6 2,238,993 - -0.1 2,239,082 + -0.6 2,239,211 + -0.5 2,239,342 - ABZR88_RS08895 0.14 +0.1 2,239,427 + ABZR88_RS08895 0.20 -0.1 2,239,488 - ABZR88_RS08895 0.25 -1.5 2,239,511 - ABZR88_RS08895 0.26 -0.5 2,239,526 - ABZR88_RS08895 0.27 +1.0 2,239,527 + ABZR88_RS08895 0.27 -1.9 2,239,600 + ABZR88_RS08895 0.32 -1.4 2,239,636 - ABZR88_RS08895 0.35 -0.6 2,239,771 - ABZR88_RS08895 0.44 -0.1 2,239,995 + ABZR88_RS08895 0.60 +0.7 2,239,995 + ABZR88_RS08895 0.60 -0.9 2,240,130 + ABZR88_RS08895 0.69 -0.2 2,240,132 + ABZR88_RS08895 0.70 +0.2 2,240,132 + ABZR88_RS08895 0.70 -2.4 2,240,132 + ABZR88_RS08895 0.70 +0.2 2,240,133 - ABZR88_RS08895 0.70 -0.2 2,240,166 + ABZR88_RS08895 0.72 -0.9 2,240,186 + ABZR88_RS08895 0.73 -0.7 2,240,221 - ABZR88_RS08895 0.76 -1.1 2,240,296 - ABZR88_RS08895 0.81 -0.9 2,240,569 + +0.7 2,240,769 + +0.0 2,240,813 + -0.5 2,241,024 - ABZR88_RS08900 0.25 -1.0 2,241,132 - ABZR88_RS08900 0.34 +0.0 2,241,212 + ABZR88_RS08900 0.42 -0.7 2,241,253 + ABZR88_RS08900 0.46 -0.6 2,241,304 + ABZR88_RS08900 0.50 -0.4 2,241,371 + ABZR88_RS08900 0.56 -0.3 2,241,371 + ABZR88_RS08900 0.56 +0.4 2,241,432 + ABZR88_RS08900 0.62 -0.9 2,241,486 + ABZR88_RS08900 0.67 -0.8 2,241,486 + ABZR88_RS08900 0.67 -0.1 2,241,529 + ABZR88_RS08900 0.71 +0.2
Or see this region's nucleotide sequence