Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08895

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08890 and ABZR88_RS08895 are separated by 180 nucleotidesABZR88_RS08895 and ABZR88_RS08900 are separated by 188 nucleotides ABZR88_RS08890: ABZR88_RS08890 - glycosyltransferase family 4 protein, at 2,237,812 to 2,238,954 _RS08890 ABZR88_RS08895: ABZR88_RS08895 - polysaccharide lyase family 1 protein, at 2,239,135 to 2,240,568 _RS08895 ABZR88_RS08900: ABZR88_RS08900 - NAD-dependent epimerase, at 2,240,757 to 2,241,845 _RS08900 Position (kb) 2239 2240 2241Strain fitness (log2 ratio) -2 -1 0 1at 2238.148 kb on + strand, within ABZR88_RS08890at 2238.303 kb on - strand, within ABZR88_RS08890at 2238.306 kb on - strand, within ABZR88_RS08890at 2238.470 kb on + strand, within ABZR88_RS08890at 2238.600 kb on + strand, within ABZR88_RS08890at 2238.666 kb on + strand, within ABZR88_RS08890at 2238.760 kb on - strand, within ABZR88_RS08890at 2238.835 kb on - strand, within ABZR88_RS08890at 2238.854 kb on - strandat 2238.967 kb on + strandat 2238.993 kb on - strandat 2239.082 kb on + strandat 2239.211 kb on + strandat 2239.342 kb on - strand, within ABZR88_RS08895at 2239.427 kb on + strand, within ABZR88_RS08895at 2239.488 kb on - strand, within ABZR88_RS08895at 2239.511 kb on - strand, within ABZR88_RS08895at 2239.526 kb on - strand, within ABZR88_RS08895at 2239.527 kb on + strand, within ABZR88_RS08895at 2239.600 kb on + strand, within ABZR88_RS08895at 2239.636 kb on - strand, within ABZR88_RS08895at 2239.771 kb on - strand, within ABZR88_RS08895at 2239.995 kb on + strand, within ABZR88_RS08895at 2239.995 kb on + strand, within ABZR88_RS08895at 2240.130 kb on + strand, within ABZR88_RS08895at 2240.132 kb on + strand, within ABZR88_RS08895at 2240.132 kb on + strand, within ABZR88_RS08895at 2240.132 kb on + strand, within ABZR88_RS08895at 2240.133 kb on - strand, within ABZR88_RS08895at 2240.166 kb on + strand, within ABZR88_RS08895at 2240.186 kb on + strand, within ABZR88_RS08895at 2240.221 kb on - strand, within ABZR88_RS08895at 2240.296 kb on - strand, within ABZR88_RS08895at 2240.569 kb on + strandat 2240.769 kb on + strandat 2240.813 kb on + strandat 2241.024 kb on - strand, within ABZR88_RS08900at 2241.132 kb on - strand, within ABZR88_RS08900at 2241.212 kb on + strand, within ABZR88_RS08900at 2241.253 kb on + strand, within ABZR88_RS08900at 2241.304 kb on + strand, within ABZR88_RS08900at 2241.371 kb on + strand, within ABZR88_RS08900at 2241.371 kb on + strand, within ABZR88_RS08900at 2241.432 kb on + strand, within ABZR88_RS08900at 2241.486 kb on + strand, within ABZR88_RS08900at 2241.486 kb on + strand, within ABZR88_RS08900at 2241.529 kb on + strand, within ABZR88_RS08900

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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2,238,148 + ABZR88_RS08890 0.29 -0.0
2,238,303 - ABZR88_RS08890 0.43 -0.2
2,238,306 - ABZR88_RS08890 0.43 -0.2
2,238,470 + ABZR88_RS08890 0.58 -1.2
2,238,600 + ABZR88_RS08890 0.69 +0.2
2,238,666 + ABZR88_RS08890 0.75 -1.1
2,238,760 - ABZR88_RS08890 0.83 +0.4
2,238,835 - ABZR88_RS08890 0.90 -0.4
2,238,854 - +0.9
2,238,967 + -0.6
2,238,993 - -0.1
2,239,082 + -0.6
2,239,211 + -0.5
2,239,342 - ABZR88_RS08895 0.14 +0.1
2,239,427 + ABZR88_RS08895 0.20 -0.1
2,239,488 - ABZR88_RS08895 0.25 -1.5
2,239,511 - ABZR88_RS08895 0.26 -0.5
2,239,526 - ABZR88_RS08895 0.27 +1.0
2,239,527 + ABZR88_RS08895 0.27 -1.9
2,239,600 + ABZR88_RS08895 0.32 -1.4
2,239,636 - ABZR88_RS08895 0.35 -0.6
2,239,771 - ABZR88_RS08895 0.44 -0.1
2,239,995 + ABZR88_RS08895 0.60 +0.7
2,239,995 + ABZR88_RS08895 0.60 -0.9
2,240,130 + ABZR88_RS08895 0.69 -0.2
2,240,132 + ABZR88_RS08895 0.70 +0.2
2,240,132 + ABZR88_RS08895 0.70 -2.4
2,240,132 + ABZR88_RS08895 0.70 +0.2
2,240,133 - ABZR88_RS08895 0.70 -0.2
2,240,166 + ABZR88_RS08895 0.72 -0.9
2,240,186 + ABZR88_RS08895 0.73 -0.7
2,240,221 - ABZR88_RS08895 0.76 -1.1
2,240,296 - ABZR88_RS08895 0.81 -0.9
2,240,569 + +0.7
2,240,769 + +0.0
2,240,813 + -0.5
2,241,024 - ABZR88_RS08900 0.25 -1.0
2,241,132 - ABZR88_RS08900 0.34 +0.0
2,241,212 + ABZR88_RS08900 0.42 -0.7
2,241,253 + ABZR88_RS08900 0.46 -0.6
2,241,304 + ABZR88_RS08900 0.50 -0.4
2,241,371 + ABZR88_RS08900 0.56 -0.3
2,241,371 + ABZR88_RS08900 0.56 +0.4
2,241,432 + ABZR88_RS08900 0.62 -0.9
2,241,486 + ABZR88_RS08900 0.67 -0.8
2,241,486 + ABZR88_RS08900 0.67 -0.1
2,241,529 + ABZR88_RS08900 0.71 +0.2

Or see this region's nucleotide sequence