Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08800 and ABZR88_RS08805 overlap by 4 nucleotides ABZR88_RS08805 and ABZR88_RS08810 are separated by 12 nucleotides ABZR88_RS08810 and ABZR88_RS08815 are separated by 10 nucleotides
ABZR88_RS08800: ABZR88_RS08800 - glycoside hydrolase 43 family protein, at 2,218,560 to 2,220,110
_RS08800
ABZR88_RS08805: ABZR88_RS08805 - endo-1,4-beta-xylanase, at 2,220,107 to 2,221,321
_RS08805
ABZR88_RS08810: ABZR88_RS08810 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,221,334 to 2,222,173
_RS08810
ABZR88_RS08815: ABZR88_RS08815 - HesA/MoeB/ThiF family protein, at 2,222,184 to 2,223,260
_RS08815
Position (kb)
2220
2221
2222 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2219.126 kb on + strand, within ABZR88_RS08800 at 2219.805 kb on + strand, within ABZR88_RS08800 at 2219.852 kb on - strand, within ABZR88_RS08800 at 2219.862 kb on - strand, within ABZR88_RS08800 at 2219.960 kb on + strand at 2219.960 kb on + strand at 2219.969 kb on + strand at 2220.012 kb on - strand at 2220.122 kb on - strand at 2220.157 kb on + strand at 2220.290 kb on + strand, within ABZR88_RS08805 at 2220.290 kb on + strand, within ABZR88_RS08805 at 2220.291 kb on - strand, within ABZR88_RS08805 at 2220.400 kb on + strand, within ABZR88_RS08805 at 2220.604 kb on + strand, within ABZR88_RS08805 at 2220.605 kb on - strand, within ABZR88_RS08805 at 2220.605 kb on - strand, within ABZR88_RS08805 at 2220.706 kb on - strand, within ABZR88_RS08805 at 2220.947 kb on - strand, within ABZR88_RS08805 at 2221.060 kb on + strand, within ABZR88_RS08805 at 2221.172 kb on + strand, within ABZR88_RS08805 at 2221.298 kb on + strand at 2221.444 kb on + strand, within ABZR88_RS08810 at 2221.476 kb on - strand, within ABZR88_RS08810 at 2221.611 kb on + strand, within ABZR88_RS08810 at 2221.705 kb on + strand, within ABZR88_RS08810 at 2221.706 kb on - strand, within ABZR88_RS08810 at 2221.747 kb on + strand, within ABZR88_RS08810 at 2221.770 kb on - strand, within ABZR88_RS08810 at 2221.907 kb on + strand, within ABZR88_RS08810 at 2222.076 kb on - strand, within ABZR88_RS08810 at 2222.144 kb on - strand at 2222.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 2,219,126 + ABZR88_RS08800 0.36 -0.1 2,219,805 + ABZR88_RS08800 0.80 -0.5 2,219,852 - ABZR88_RS08800 0.83 -0.8 2,219,862 - ABZR88_RS08800 0.84 -0.8 2,219,960 + -1.2 2,219,960 + -0.4 2,219,969 + -0.1 2,220,012 - -0.6 2,220,122 - +0.0 2,220,157 + -1.2 2,220,290 + ABZR88_RS08805 0.15 -0.5 2,220,290 + ABZR88_RS08805 0.15 -1.0 2,220,291 - ABZR88_RS08805 0.15 +1.4 2,220,400 + ABZR88_RS08805 0.24 -0.6 2,220,604 + ABZR88_RS08805 0.41 -2.7 2,220,605 - ABZR88_RS08805 0.41 -0.3 2,220,605 - ABZR88_RS08805 0.41 -0.3 2,220,706 - ABZR88_RS08805 0.49 -0.4 2,220,947 - ABZR88_RS08805 0.69 -0.7 2,221,060 + ABZR88_RS08805 0.78 +0.2 2,221,172 + ABZR88_RS08805 0.88 +1.0 2,221,298 + -1.2 2,221,444 + ABZR88_RS08810 0.13 +0.2 2,221,476 - ABZR88_RS08810 0.17 +0.5 2,221,611 + ABZR88_RS08810 0.33 -0.1 2,221,705 + ABZR88_RS08810 0.44 -0.9 2,221,706 - ABZR88_RS08810 0.44 +0.3 2,221,747 + ABZR88_RS08810 0.49 -0.2 2,221,770 - ABZR88_RS08810 0.52 +1.9 2,221,907 + ABZR88_RS08810 0.68 +0.3 2,222,076 - ABZR88_RS08810 0.88 +0.2 2,222,144 - +0.8 2,222,201 - +0.0
Or see this region's nucleotide sequence