Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08805

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08800 and ABZR88_RS08805 overlap by 4 nucleotidesABZR88_RS08805 and ABZR88_RS08810 are separated by 12 nucleotidesABZR88_RS08810 and ABZR88_RS08815 are separated by 10 nucleotides ABZR88_RS08800: ABZR88_RS08800 - glycoside hydrolase 43 family protein, at 2,218,560 to 2,220,110 _RS08800 ABZR88_RS08805: ABZR88_RS08805 - endo-1,4-beta-xylanase, at 2,220,107 to 2,221,321 _RS08805 ABZR88_RS08810: ABZR88_RS08810 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,221,334 to 2,222,173 _RS08810 ABZR88_RS08815: ABZR88_RS08815 - HesA/MoeB/ThiF family protein, at 2,222,184 to 2,223,260 _RS08815 Position (kb) 2220 2221 2222Strain fitness (log2 ratio) -2 -1 0 1 2at 2219.126 kb on + strand, within ABZR88_RS08800at 2219.805 kb on + strand, within ABZR88_RS08800at 2219.852 kb on - strand, within ABZR88_RS08800at 2219.862 kb on - strand, within ABZR88_RS08800at 2219.960 kb on + strandat 2219.960 kb on + strandat 2219.969 kb on + strandat 2220.012 kb on - strandat 2220.122 kb on - strandat 2220.157 kb on + strandat 2220.290 kb on + strand, within ABZR88_RS08805at 2220.290 kb on + strand, within ABZR88_RS08805at 2220.291 kb on - strand, within ABZR88_RS08805at 2220.400 kb on + strand, within ABZR88_RS08805at 2220.604 kb on + strand, within ABZR88_RS08805at 2220.605 kb on - strand, within ABZR88_RS08805at 2220.605 kb on - strand, within ABZR88_RS08805at 2220.706 kb on - strand, within ABZR88_RS08805at 2220.947 kb on - strand, within ABZR88_RS08805at 2221.060 kb on + strand, within ABZR88_RS08805at 2221.172 kb on + strand, within ABZR88_RS08805at 2221.298 kb on + strandat 2221.444 kb on + strand, within ABZR88_RS08810at 2221.476 kb on - strand, within ABZR88_RS08810at 2221.611 kb on + strand, within ABZR88_RS08810at 2221.705 kb on + strand, within ABZR88_RS08810at 2221.706 kb on - strand, within ABZR88_RS08810at 2221.747 kb on + strand, within ABZR88_RS08810at 2221.770 kb on - strand, within ABZR88_RS08810at 2221.907 kb on + strand, within ABZR88_RS08810at 2222.076 kb on - strand, within ABZR88_RS08810at 2222.144 kb on - strandat 2222.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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2,219,126 + ABZR88_RS08800 0.36 -0.1
2,219,805 + ABZR88_RS08800 0.80 -0.5
2,219,852 - ABZR88_RS08800 0.83 -0.8
2,219,862 - ABZR88_RS08800 0.84 -0.8
2,219,960 + -1.2
2,219,960 + -0.4
2,219,969 + -0.1
2,220,012 - -0.6
2,220,122 - +0.0
2,220,157 + -1.2
2,220,290 + ABZR88_RS08805 0.15 -0.5
2,220,290 + ABZR88_RS08805 0.15 -1.0
2,220,291 - ABZR88_RS08805 0.15 +1.4
2,220,400 + ABZR88_RS08805 0.24 -0.6
2,220,604 + ABZR88_RS08805 0.41 -2.7
2,220,605 - ABZR88_RS08805 0.41 -0.3
2,220,605 - ABZR88_RS08805 0.41 -0.3
2,220,706 - ABZR88_RS08805 0.49 -0.4
2,220,947 - ABZR88_RS08805 0.69 -0.7
2,221,060 + ABZR88_RS08805 0.78 +0.2
2,221,172 + ABZR88_RS08805 0.88 +1.0
2,221,298 + -1.2
2,221,444 + ABZR88_RS08810 0.13 +0.2
2,221,476 - ABZR88_RS08810 0.17 +0.5
2,221,611 + ABZR88_RS08810 0.33 -0.1
2,221,705 + ABZR88_RS08810 0.44 -0.9
2,221,706 - ABZR88_RS08810 0.44 +0.3
2,221,747 + ABZR88_RS08810 0.49 -0.2
2,221,770 - ABZR88_RS08810 0.52 +1.9
2,221,907 + ABZR88_RS08810 0.68 +0.3
2,222,076 - ABZR88_RS08810 0.88 +0.2
2,222,144 - +0.8
2,222,201 - +0.0

Or see this region's nucleotide sequence