Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08495

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08490 and ABZR88_RS08495 are separated by 19 nucleotidesABZR88_RS08495 and ABZR88_RS08500 are separated by 500 nucleotides ABZR88_RS08490: ABZR88_RS08490 - RagB/SusD family nutrient uptake outer membrane protein, at 2,119,916 to 2,121,727 _RS08490 ABZR88_RS08495: ABZR88_RS08495 - TonB-dependent receptor, at 2,121,747 to 2,124,998 _RS08495 ABZR88_RS08500: ABZR88_RS08500 - hybrid sensor histidine kinase/response regulator transcription factor, at 2,125,499 to 2,129,911 _RS08500 Position (kb) 2121 2122 2123 2124 2125Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2120.774 kb on - strand, within ABZR88_RS08490at 2120.785 kb on - strand, within ABZR88_RS08490at 2120.939 kb on + strand, within ABZR88_RS08490at 2120.968 kb on + strand, within ABZR88_RS08490at 2120.969 kb on - strand, within ABZR88_RS08490at 2120.969 kb on - strand, within ABZR88_RS08490at 2121.027 kb on + strand, within ABZR88_RS08490at 2121.348 kb on - strand, within ABZR88_RS08490at 2121.387 kb on + strand, within ABZR88_RS08490at 2121.387 kb on + strand, within ABZR88_RS08490at 2121.561 kb on + strandat 2121.880 kb on + strandat 2121.901 kb on + strandat 2121.980 kb on + strandat 2122.115 kb on - strand, within ABZR88_RS08495at 2122.172 kb on - strand, within ABZR88_RS08495at 2122.312 kb on - strand, within ABZR88_RS08495at 2122.320 kb on - strand, within ABZR88_RS08495at 2122.442 kb on + strand, within ABZR88_RS08495at 2122.469 kb on + strand, within ABZR88_RS08495at 2122.638 kb on - strand, within ABZR88_RS08495at 2122.740 kb on - strand, within ABZR88_RS08495at 2122.814 kb on + strand, within ABZR88_RS08495at 2122.831 kb on + strand, within ABZR88_RS08495at 2122.831 kb on + strand, within ABZR88_RS08495at 2122.835 kb on + strand, within ABZR88_RS08495at 2122.902 kb on - strand, within ABZR88_RS08495at 2123.034 kb on - strand, within ABZR88_RS08495at 2123.149 kb on + strand, within ABZR88_RS08495at 2123.216 kb on - strand, within ABZR88_RS08495at 2123.226 kb on - strand, within ABZR88_RS08495at 2123.358 kb on - strand, within ABZR88_RS08495at 2123.504 kb on + strand, within ABZR88_RS08495at 2123.505 kb on - strand, within ABZR88_RS08495at 2123.580 kb on - strand, within ABZR88_RS08495at 2123.631 kb on - strand, within ABZR88_RS08495at 2123.666 kb on + strand, within ABZR88_RS08495at 2123.699 kb on + strand, within ABZR88_RS08495at 2123.972 kb on + strand, within ABZR88_RS08495at 2124.005 kb on + strand, within ABZR88_RS08495at 2124.181 kb on + strand, within ABZR88_RS08495at 2124.181 kb on + strand, within ABZR88_RS08495at 2124.451 kb on + strand, within ABZR88_RS08495at 2124.452 kb on - strand, within ABZR88_RS08495at 2124.452 kb on - strand, within ABZR88_RS08495at 2124.522 kb on - strand, within ABZR88_RS08495at 2124.750 kb on - strandat 2125.007 kb on + strandat 2125.196 kb on + strandat 2125.504 kb on + strandat 2125.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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2,120,774 - ABZR88_RS08490 0.47 -2.7
2,120,785 - ABZR88_RS08490 0.48 -3.2
2,120,939 + ABZR88_RS08490 0.56 -1.4
2,120,968 + ABZR88_RS08490 0.58 -5.3
2,120,969 - ABZR88_RS08490 0.58 -6.0
2,120,969 - ABZR88_RS08490 0.58 -1.0
2,121,027 + ABZR88_RS08490 0.61 -3.5
2,121,348 - ABZR88_RS08490 0.79 -2.9
2,121,387 + ABZR88_RS08490 0.81 -2.3
2,121,387 + ABZR88_RS08490 0.81 -4.1
2,121,561 + -3.4
2,121,880 + -4.1
2,121,901 + -2.8
2,121,980 + -0.7
2,122,115 - ABZR88_RS08495 0.11 -2.3
2,122,172 - ABZR88_RS08495 0.13 -2.3
2,122,312 - ABZR88_RS08495 0.17 -0.8
2,122,320 - ABZR88_RS08495 0.18 -3.0
2,122,442 + ABZR88_RS08495 0.21 -3.3
2,122,469 + ABZR88_RS08495 0.22 -3.1
2,122,638 - ABZR88_RS08495 0.27 +3.0
2,122,740 - ABZR88_RS08495 0.31 -1.1
2,122,814 + ABZR88_RS08495 0.33 -3.6
2,122,831 + ABZR88_RS08495 0.33 -3.1
2,122,831 + ABZR88_RS08495 0.33 -3.3
2,122,835 + ABZR88_RS08495 0.33 -2.6
2,122,902 - ABZR88_RS08495 0.36 -3.0
2,123,034 - ABZR88_RS08495 0.40 -0.1
2,123,149 + ABZR88_RS08495 0.43 +1.7
2,123,216 - ABZR88_RS08495 0.45 -2.4
2,123,226 - ABZR88_RS08495 0.45 -3.3
2,123,358 - ABZR88_RS08495 0.50 -1.0
2,123,504 + ABZR88_RS08495 0.54 -2.8
2,123,505 - ABZR88_RS08495 0.54 -3.6
2,123,580 - ABZR88_RS08495 0.56 -1.8
2,123,631 - ABZR88_RS08495 0.58 -2.4
2,123,666 + ABZR88_RS08495 0.59 -2.1
2,123,699 + ABZR88_RS08495 0.60 -2.6
2,123,972 + ABZR88_RS08495 0.68 -2.1
2,124,005 + ABZR88_RS08495 0.69 -3.1
2,124,181 + ABZR88_RS08495 0.75 -4.4
2,124,181 + ABZR88_RS08495 0.75 -3.7
2,124,451 + ABZR88_RS08495 0.83 -3.1
2,124,452 - ABZR88_RS08495 0.83 -2.5
2,124,452 - ABZR88_RS08495 0.83 -1.1
2,124,522 - ABZR88_RS08495 0.85 -2.9
2,124,750 - -1.6
2,125,007 + -3.5
2,125,196 + +3.0
2,125,504 + -2.7
2,125,504 + -2.7

Or see this region's nucleotide sequence