Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08490 and ABZR88_RS08495 are separated by 19 nucleotides ABZR88_RS08495 and ABZR88_RS08500 are separated by 500 nucleotides
ABZR88_RS08490: ABZR88_RS08490 - RagB/SusD family nutrient uptake outer membrane protein, at 2,119,916 to 2,121,727
_RS08490
ABZR88_RS08495: ABZR88_RS08495 - TonB-dependent receptor, at 2,121,747 to 2,124,998
_RS08495
ABZR88_RS08500: ABZR88_RS08500 - hybrid sensor histidine kinase/response regulator transcription factor, at 2,125,499 to 2,129,911
_RS08500
Position (kb)
2121
2122
2123
2124
2125 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 2120.774 kb on - strand, within ABZR88_RS08490 at 2120.785 kb on - strand, within ABZR88_RS08490 at 2120.939 kb on + strand, within ABZR88_RS08490 at 2120.968 kb on + strand, within ABZR88_RS08490 at 2120.969 kb on - strand, within ABZR88_RS08490 at 2120.969 kb on - strand, within ABZR88_RS08490 at 2121.027 kb on + strand, within ABZR88_RS08490 at 2121.348 kb on - strand, within ABZR88_RS08490 at 2121.387 kb on + strand, within ABZR88_RS08490 at 2121.387 kb on + strand, within ABZR88_RS08490 at 2121.561 kb on + strand at 2121.880 kb on + strand at 2121.901 kb on + strand at 2121.980 kb on + strand at 2122.115 kb on - strand, within ABZR88_RS08495 at 2122.172 kb on - strand, within ABZR88_RS08495 at 2122.312 kb on - strand, within ABZR88_RS08495 at 2122.320 kb on - strand, within ABZR88_RS08495 at 2122.442 kb on + strand, within ABZR88_RS08495 at 2122.469 kb on + strand, within ABZR88_RS08495 at 2122.638 kb on - strand, within ABZR88_RS08495 at 2122.740 kb on - strand, within ABZR88_RS08495 at 2122.814 kb on + strand, within ABZR88_RS08495 at 2122.831 kb on + strand, within ABZR88_RS08495 at 2122.831 kb on + strand, within ABZR88_RS08495 at 2122.835 kb on + strand, within ABZR88_RS08495 at 2122.902 kb on - strand, within ABZR88_RS08495 at 2123.034 kb on - strand, within ABZR88_RS08495 at 2123.149 kb on + strand, within ABZR88_RS08495 at 2123.216 kb on - strand, within ABZR88_RS08495 at 2123.226 kb on - strand, within ABZR88_RS08495 at 2123.358 kb on - strand, within ABZR88_RS08495 at 2123.504 kb on + strand, within ABZR88_RS08495 at 2123.505 kb on - strand, within ABZR88_RS08495 at 2123.580 kb on - strand, within ABZR88_RS08495 at 2123.631 kb on - strand, within ABZR88_RS08495 at 2123.666 kb on + strand, within ABZR88_RS08495 at 2123.699 kb on + strand, within ABZR88_RS08495 at 2123.972 kb on + strand, within ABZR88_RS08495 at 2124.005 kb on + strand, within ABZR88_RS08495 at 2124.181 kb on + strand, within ABZR88_RS08495 at 2124.181 kb on + strand, within ABZR88_RS08495 at 2124.451 kb on + strand, within ABZR88_RS08495 at 2124.452 kb on - strand, within ABZR88_RS08495 at 2124.452 kb on - strand, within ABZR88_RS08495 at 2124.522 kb on - strand, within ABZR88_RS08495 at 2124.750 kb on - strand at 2125.007 kb on + strand at 2125.196 kb on + strand at 2125.504 kb on + strand at 2125.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 2,120,774 - ABZR88_RS08490 0.47 -2.7 2,120,785 - ABZR88_RS08490 0.48 -3.2 2,120,939 + ABZR88_RS08490 0.56 -1.4 2,120,968 + ABZR88_RS08490 0.58 -5.3 2,120,969 - ABZR88_RS08490 0.58 -6.0 2,120,969 - ABZR88_RS08490 0.58 -1.0 2,121,027 + ABZR88_RS08490 0.61 -3.5 2,121,348 - ABZR88_RS08490 0.79 -2.9 2,121,387 + ABZR88_RS08490 0.81 -2.3 2,121,387 + ABZR88_RS08490 0.81 -4.1 2,121,561 + -3.4 2,121,880 + -4.1 2,121,901 + -2.8 2,121,980 + -0.7 2,122,115 - ABZR88_RS08495 0.11 -2.3 2,122,172 - ABZR88_RS08495 0.13 -2.3 2,122,312 - ABZR88_RS08495 0.17 -0.8 2,122,320 - ABZR88_RS08495 0.18 -3.0 2,122,442 + ABZR88_RS08495 0.21 -3.3 2,122,469 + ABZR88_RS08495 0.22 -3.1 2,122,638 - ABZR88_RS08495 0.27 +3.0 2,122,740 - ABZR88_RS08495 0.31 -1.1 2,122,814 + ABZR88_RS08495 0.33 -3.6 2,122,831 + ABZR88_RS08495 0.33 -3.1 2,122,831 + ABZR88_RS08495 0.33 -3.3 2,122,835 + ABZR88_RS08495 0.33 -2.6 2,122,902 - ABZR88_RS08495 0.36 -3.0 2,123,034 - ABZR88_RS08495 0.40 -0.1 2,123,149 + ABZR88_RS08495 0.43 +1.7 2,123,216 - ABZR88_RS08495 0.45 -2.4 2,123,226 - ABZR88_RS08495 0.45 -3.3 2,123,358 - ABZR88_RS08495 0.50 -1.0 2,123,504 + ABZR88_RS08495 0.54 -2.8 2,123,505 - ABZR88_RS08495 0.54 -3.6 2,123,580 - ABZR88_RS08495 0.56 -1.8 2,123,631 - ABZR88_RS08495 0.58 -2.4 2,123,666 + ABZR88_RS08495 0.59 -2.1 2,123,699 + ABZR88_RS08495 0.60 -2.6 2,123,972 + ABZR88_RS08495 0.68 -2.1 2,124,005 + ABZR88_RS08495 0.69 -3.1 2,124,181 + ABZR88_RS08495 0.75 -4.4 2,124,181 + ABZR88_RS08495 0.75 -3.7 2,124,451 + ABZR88_RS08495 0.83 -3.1 2,124,452 - ABZR88_RS08495 0.83 -2.5 2,124,452 - ABZR88_RS08495 0.83 -1.1 2,124,522 - ABZR88_RS08495 0.85 -2.9 2,124,750 - -1.6 2,125,007 + -3.5 2,125,196 + +3.0 2,125,504 + -2.7 2,125,504 + -2.7
Or see this region's nucleotide sequence