Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08395 and ABZR88_RS08400 are separated by 13 nucleotides ABZR88_RS08400 and ABZR88_RS08405 overlap by 11 nucleotides
ABZR88_RS08395: ABZR88_RS08395 - hypothetical protein, at 2,097,576 to 2,098,928
_RS08395
ABZR88_RS08400: ABZR88_RS08400 - hypothetical protein, at 2,098,942 to 2,100,540
_RS08400
ABZR88_RS08405: ABZR88_RS08405 - NAD(P)/FAD-dependent oxidoreductase, at 2,100,530 to 2,101,969
_RS08405
Position (kb)
2098
2099
2100
2101 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2097.969 kb on + strand, within ABZR88_RS08395 at 2098.067 kb on + strand, within ABZR88_RS08395 at 2098.281 kb on - strand, within ABZR88_RS08395 at 2098.329 kb on - strand, within ABZR88_RS08395 at 2098.336 kb on + strand, within ABZR88_RS08395 at 2098.337 kb on - strand, within ABZR88_RS08395 at 2098.441 kb on - strand, within ABZR88_RS08395 at 2098.485 kb on + strand, within ABZR88_RS08395 at 2098.486 kb on - strand, within ABZR88_RS08395 at 2098.486 kb on - strand, within ABZR88_RS08395 at 2098.705 kb on - strand, within ABZR88_RS08395 at 2098.879 kb on - strand at 2099.153 kb on + strand, within ABZR88_RS08400 at 2099.175 kb on + strand, within ABZR88_RS08400 at 2099.317 kb on + strand, within ABZR88_RS08400 at 2099.493 kb on + strand, within ABZR88_RS08400 at 2099.493 kb on + strand, within ABZR88_RS08400 at 2099.506 kb on + strand, within ABZR88_RS08400 at 2099.621 kb on + strand, within ABZR88_RS08400 at 2099.834 kb on + strand, within ABZR88_RS08400 at 2099.855 kb on - strand, within ABZR88_RS08400 at 2099.960 kb on + strand, within ABZR88_RS08400 at 2099.961 kb on - strand, within ABZR88_RS08400 at 2099.961 kb on - strand, within ABZR88_RS08400 at 2100.024 kb on - strand, within ABZR88_RS08400 at 2100.175 kb on + strand, within ABZR88_RS08400 at 2100.283 kb on - strand, within ABZR88_RS08400 at 2100.403 kb on + strand at 2100.469 kb on + strand at 2100.490 kb on - strand at 2100.499 kb on + strand at 2100.715 kb on - strand, within ABZR88_RS08405 at 2100.866 kb on - strand, within ABZR88_RS08405 at 2101.047 kb on + strand, within ABZR88_RS08405 at 2101.101 kb on + strand, within ABZR88_RS08405 at 2101.262 kb on + strand, within ABZR88_RS08405 at 2101.358 kb on - strand, within ABZR88_RS08405
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 2,097,969 + ABZR88_RS08395 0.29 -2.5 2,098,067 + ABZR88_RS08395 0.36 -2.2 2,098,281 - ABZR88_RS08395 0.52 -0.1 2,098,329 - ABZR88_RS08395 0.56 -1.1 2,098,336 + ABZR88_RS08395 0.56 -2.9 2,098,337 - ABZR88_RS08395 0.56 -1.8 2,098,441 - ABZR88_RS08395 0.64 -0.6 2,098,485 + ABZR88_RS08395 0.67 -4.0 2,098,486 - ABZR88_RS08395 0.67 -1.0 2,098,486 - ABZR88_RS08395 0.67 -0.6 2,098,705 - ABZR88_RS08395 0.83 -2.3 2,098,879 - -1.0 2,099,153 + ABZR88_RS08400 0.13 -3.4 2,099,175 + ABZR88_RS08400 0.15 -2.4 2,099,317 + ABZR88_RS08400 0.23 -2.3 2,099,493 + ABZR88_RS08400 0.34 -1.8 2,099,493 + ABZR88_RS08400 0.34 -3.4 2,099,506 + ABZR88_RS08400 0.35 -2.6 2,099,621 + ABZR88_RS08400 0.42 -1.5 2,099,834 + ABZR88_RS08400 0.56 -1.8 2,099,855 - ABZR88_RS08400 0.57 -0.9 2,099,960 + ABZR88_RS08400 0.64 -2.7 2,099,961 - ABZR88_RS08400 0.64 -1.0 2,099,961 - ABZR88_RS08400 0.64 -0.3 2,100,024 - ABZR88_RS08400 0.68 -0.5 2,100,175 + ABZR88_RS08400 0.77 -0.9 2,100,283 - ABZR88_RS08400 0.84 +0.3 2,100,403 + -4.9 2,100,469 + -3.4 2,100,490 - -2.0 2,100,499 + -3.0 2,100,715 - ABZR88_RS08405 0.13 -1.7 2,100,866 - ABZR88_RS08405 0.23 -1.7 2,101,047 + ABZR88_RS08405 0.36 -3.0 2,101,101 + ABZR88_RS08405 0.40 -3.7 2,101,262 + ABZR88_RS08405 0.51 -2.2 2,101,358 - ABZR88_RS08405 0.57 -4.0
Or see this region's nucleotide sequence