Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08400

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08395 and ABZR88_RS08400 are separated by 13 nucleotidesABZR88_RS08400 and ABZR88_RS08405 overlap by 11 nucleotides ABZR88_RS08395: ABZR88_RS08395 - hypothetical protein, at 2,097,576 to 2,098,928 _RS08395 ABZR88_RS08400: ABZR88_RS08400 - hypothetical protein, at 2,098,942 to 2,100,540 _RS08400 ABZR88_RS08405: ABZR88_RS08405 - NAD(P)/FAD-dependent oxidoreductase, at 2,100,530 to 2,101,969 _RS08405 Position (kb) 2098 2099 2100 2101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2097.969 kb on + strand, within ABZR88_RS08395at 2098.067 kb on + strand, within ABZR88_RS08395at 2098.281 kb on - strand, within ABZR88_RS08395at 2098.329 kb on - strand, within ABZR88_RS08395at 2098.336 kb on + strand, within ABZR88_RS08395at 2098.337 kb on - strand, within ABZR88_RS08395at 2098.441 kb on - strand, within ABZR88_RS08395at 2098.485 kb on + strand, within ABZR88_RS08395at 2098.486 kb on - strand, within ABZR88_RS08395at 2098.486 kb on - strand, within ABZR88_RS08395at 2098.705 kb on - strand, within ABZR88_RS08395at 2098.879 kb on - strandat 2099.153 kb on + strand, within ABZR88_RS08400at 2099.175 kb on + strand, within ABZR88_RS08400at 2099.317 kb on + strand, within ABZR88_RS08400at 2099.493 kb on + strand, within ABZR88_RS08400at 2099.493 kb on + strand, within ABZR88_RS08400at 2099.506 kb on + strand, within ABZR88_RS08400at 2099.621 kb on + strand, within ABZR88_RS08400at 2099.834 kb on + strand, within ABZR88_RS08400at 2099.855 kb on - strand, within ABZR88_RS08400at 2099.960 kb on + strand, within ABZR88_RS08400at 2099.961 kb on - strand, within ABZR88_RS08400at 2099.961 kb on - strand, within ABZR88_RS08400at 2100.024 kb on - strand, within ABZR88_RS08400at 2100.175 kb on + strand, within ABZR88_RS08400at 2100.283 kb on - strand, within ABZR88_RS08400at 2100.403 kb on + strandat 2100.469 kb on + strandat 2100.490 kb on - strandat 2100.499 kb on + strandat 2100.715 kb on - strand, within ABZR88_RS08405at 2100.866 kb on - strand, within ABZR88_RS08405at 2101.047 kb on + strand, within ABZR88_RS08405at 2101.101 kb on + strand, within ABZR88_RS08405at 2101.262 kb on + strand, within ABZR88_RS08405at 2101.358 kb on - strand, within ABZR88_RS08405

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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2,097,969 + ABZR88_RS08395 0.29 -2.5
2,098,067 + ABZR88_RS08395 0.36 -2.2
2,098,281 - ABZR88_RS08395 0.52 -0.1
2,098,329 - ABZR88_RS08395 0.56 -1.1
2,098,336 + ABZR88_RS08395 0.56 -2.9
2,098,337 - ABZR88_RS08395 0.56 -1.8
2,098,441 - ABZR88_RS08395 0.64 -0.6
2,098,485 + ABZR88_RS08395 0.67 -4.0
2,098,486 - ABZR88_RS08395 0.67 -1.0
2,098,486 - ABZR88_RS08395 0.67 -0.6
2,098,705 - ABZR88_RS08395 0.83 -2.3
2,098,879 - -1.0
2,099,153 + ABZR88_RS08400 0.13 -3.4
2,099,175 + ABZR88_RS08400 0.15 -2.4
2,099,317 + ABZR88_RS08400 0.23 -2.3
2,099,493 + ABZR88_RS08400 0.34 -1.8
2,099,493 + ABZR88_RS08400 0.34 -3.4
2,099,506 + ABZR88_RS08400 0.35 -2.6
2,099,621 + ABZR88_RS08400 0.42 -1.5
2,099,834 + ABZR88_RS08400 0.56 -1.8
2,099,855 - ABZR88_RS08400 0.57 -0.9
2,099,960 + ABZR88_RS08400 0.64 -2.7
2,099,961 - ABZR88_RS08400 0.64 -1.0
2,099,961 - ABZR88_RS08400 0.64 -0.3
2,100,024 - ABZR88_RS08400 0.68 -0.5
2,100,175 + ABZR88_RS08400 0.77 -0.9
2,100,283 - ABZR88_RS08400 0.84 +0.3
2,100,403 + -4.9
2,100,469 + -3.4
2,100,490 - -2.0
2,100,499 + -3.0
2,100,715 - ABZR88_RS08405 0.13 -1.7
2,100,866 - ABZR88_RS08405 0.23 -1.7
2,101,047 + ABZR88_RS08405 0.36 -3.0
2,101,101 + ABZR88_RS08405 0.40 -3.7
2,101,262 + ABZR88_RS08405 0.51 -2.2
2,101,358 - ABZR88_RS08405 0.57 -4.0

Or see this region's nucleotide sequence