Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03350 and ABZR88_RS03355 are separated by 59 nucleotides ABZR88_RS03355 and ABZR88_RS03360 are separated by 203 nucleotides ABZR88_RS03360 and ABZR88_RS03365 are separated by 44 nucleotides ABZR88_RS03365 and ABZR88_RS03370 overlap by 4 nucleotides ABZR88_RS03370 and ABZR88_RS03375 are separated by 2 nucleotides
ABZR88_RS03350: ABZR88_RS03350 - hypothetical protein, at 804,871 to 805,170
_RS03350
ABZR88_RS03355: ABZR88_RS03355 - helix-turn-helix transcriptional regulator, at 805,230 to 805,595
_RS03355
ABZR88_RS03360: ABZR88_RS03360 - hypothetical protein, at 805,799 to 806,041
_RS03360
ABZR88_RS03365: ABZR88_RS03365 - ABC transporter ATP-binding protein, at 806,086 to 806,835
_RS03365
ABZR88_RS03370: ABZR88_RS03370 - ABC transporter permease, at 806,832 to 807,707
_RS03370
ABZR88_RS03375: ABZR88_RS03375 - ABC transporter substrate-binding protein, at 807,710 to 808,684
_RS03375
Position (kb) 806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 805.116 kb on - strand, within ABZR88_RS03350 at 805.124 kb on - strand, within ABZR88_RS03350 at 805.228 kb on - strand at 805.598 kb on + strand at 805.864 kb on + strand, within ABZR88_RS03360 at 805.885 kb on - strand, within ABZR88_RS03360 at 806.016 kb on - strand, within ABZR88_RS03360 at 806.466 kb on + strand, within ABZR88_RS03365 at 806.581 kb on + strand, within ABZR88_RS03365 at 806.609 kb on + strand, within ABZR88_RS03365 at 806.638 kb on - strand, within ABZR88_RS03365 at 806.643 kb on + strand, within ABZR88_RS03365 at 806.851 kb on - strand at 806.911 kb on + strand at 807.267 kb on + strand, within ABZR88_RS03370 at 807.314 kb on + strand, within ABZR88_RS03370 at 807.362 kb on + strand, within ABZR88_RS03370 at 807.432 kb on - strand, within ABZR88_RS03370 at 807.432 kb on - strand, within ABZR88_RS03370 at 807.450 kb on + strand, within ABZR88_RS03370 at 807.474 kb on - strand, within ABZR88_RS03370 at 807.591 kb on - strand, within ABZR88_RS03370 at 807.593 kb on - strand, within ABZR88_RS03370 at 807.593 kb on - strand, within ABZR88_RS03370 at 807.711 kb on + strand at 807.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 805,116 - ABZR88_RS03350 0.82 -0.6 805,124 - ABZR88_RS03350 0.84 +0.3 805,228 - -0.1 805,598 + +0.8 805,864 + ABZR88_RS03360 0.27 +0.8 805,885 - ABZR88_RS03360 0.35 -1.2 806,016 - ABZR88_RS03360 0.89 +1.1 806,466 + ABZR88_RS03365 0.51 -1.0 806,581 + ABZR88_RS03365 0.66 -2.0 806,609 + ABZR88_RS03365 0.70 -2.4 806,638 - ABZR88_RS03365 0.74 -2.1 806,643 + ABZR88_RS03365 0.74 -2.5 806,851 - -0.8 806,911 + -1.4 807,267 + ABZR88_RS03370 0.50 -3.2 807,314 + ABZR88_RS03370 0.55 -0.8 807,362 + ABZR88_RS03370 0.61 -3.5 807,432 - ABZR88_RS03370 0.68 -1.6 807,432 - ABZR88_RS03370 0.68 -3.0 807,450 + ABZR88_RS03370 0.71 -1.3 807,474 - ABZR88_RS03370 0.73 -2.4 807,591 - ABZR88_RS03370 0.87 +0.6 807,593 - ABZR88_RS03370 0.87 -1.5 807,593 - ABZR88_RS03370 0.87 -0.5 807,711 + -2.5 807,740 - -1.7
Or see this region's nucleotide sequence