Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02115 and ABZR88_RS02120 are separated by 7 nucleotides ABZR88_RS02120 and ABZR88_RS02125 are separated by 24 nucleotides
ABZR88_RS02115: ABZR88_RS02115 - alpha/beta hydrolase, at 477,253 to 478,224
_RS02115
ABZR88_RS02120: ABZR88_RS02120 - glycoside hydrolase family 105 protein, at 478,232 to 479,425
_RS02120
ABZR88_RS02125: ABZR88_RS02125 - pectinesterase family protein, at 479,450 to 480,418
_RS02125
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 477.526 kb on - strand, within ABZR88_RS02115 at 477.528 kb on - strand, within ABZR88_RS02115 at 477.528 kb on - strand, within ABZR88_RS02115 at 477.531 kb on + strand, within ABZR88_RS02115 at 477.536 kb on + strand, within ABZR88_RS02115 at 477.735 kb on + strand, within ABZR88_RS02115 at 477.955 kb on + strand, within ABZR88_RS02115 at 478.018 kb on - strand, within ABZR88_RS02115 at 478.083 kb on + strand, within ABZR88_RS02115 at 478.138 kb on - strand at 478.200 kb on - strand at 478.237 kb on - strand at 478.523 kb on + strand, within ABZR88_RS02120 at 478.581 kb on + strand, within ABZR88_RS02120 at 478.585 kb on + strand, within ABZR88_RS02120 at 478.721 kb on + strand, within ABZR88_RS02120 at 478.722 kb on - strand, within ABZR88_RS02120 at 478.843 kb on - strand, within ABZR88_RS02120 at 479.011 kb on - strand, within ABZR88_RS02120 at 479.080 kb on - strand, within ABZR88_RS02120 at 479.207 kb on + strand, within ABZR88_RS02120 at 479.319 kb on - strand at 479.324 kb on + strand at 479.324 kb on + strand at 479.392 kb on - strand at 479.465 kb on - strand at 479.723 kb on + strand, within ABZR88_RS02125 at 479.979 kb on - strand, within ABZR88_RS02125 at 479.980 kb on + strand, within ABZR88_RS02125 at 480.101 kb on + strand, within ABZR88_RS02125 at 480.198 kb on - strand, within ABZR88_RS02125 at 480.278 kb on + strand, within ABZR88_RS02125 at 480.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 477,526 - ABZR88_RS02115 0.28 -2.3 477,528 - ABZR88_RS02115 0.28 -1.5 477,528 - ABZR88_RS02115 0.28 -0.9 477,531 + ABZR88_RS02115 0.29 +0.7 477,536 + ABZR88_RS02115 0.29 +1.9 477,735 + ABZR88_RS02115 0.50 -0.7 477,955 + ABZR88_RS02115 0.72 +0.5 478,018 - ABZR88_RS02115 0.79 -0.4 478,083 + ABZR88_RS02115 0.85 +0.7 478,138 - -1.3 478,200 - -1.2 478,237 - +0.9 478,523 + ABZR88_RS02120 0.24 -0.3 478,581 + ABZR88_RS02120 0.29 -0.6 478,585 + ABZR88_RS02120 0.30 -2.1 478,721 + ABZR88_RS02120 0.41 -1.9 478,722 - ABZR88_RS02120 0.41 -1.5 478,843 - ABZR88_RS02120 0.51 +0.0 479,011 - ABZR88_RS02120 0.65 -0.7 479,080 - ABZR88_RS02120 0.71 -0.7 479,207 + ABZR88_RS02120 0.82 -0.1 479,319 - -0.1 479,324 + -1.3 479,324 + +0.0 479,392 - +0.8 479,465 - -0.3 479,723 + ABZR88_RS02125 0.28 -2.1 479,979 - ABZR88_RS02125 0.55 +0.9 479,980 + ABZR88_RS02125 0.55 -2.2 480,101 + ABZR88_RS02125 0.67 -1.2 480,198 - ABZR88_RS02125 0.77 +0.8 480,278 + ABZR88_RS02125 0.85 -1.5 480,368 - -0.1
Or see this region's nucleotide sequence