Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01685 and ABZR88_RS01690 are separated by 46 nucleotides ABZR88_RS01690 and ABZR88_RS01695 are separated by 91 nucleotides ABZR88_RS01695 and ABZR88_RS01700 are separated by 312 nucleotides ABZR88_RS01700 and ABZR88_RS01705 are separated by 49 nucleotides
ABZR88_RS01685: ABZR88_RS01685 - thioredoxin-dependent thiol peroxidase, at 383,385 to 383,846
_RS01685
ABZR88_RS01690: ABZR88_RS01690 - transketolase, at 383,893 to 384,738
_RS01690
ABZR88_RS01695: ABZR88_RS01695 - transketolase family protein, at 384,830 to 385,789
_RS01695
ABZR88_RS01700: ABZR88_RS01700 - RNA polymerase sigma factor, at 386,102 to 386,656
_RS01700
ABZR88_RS01705: ABZR88_RS01705 - hypothetical protein, at 386,706 to 387,569
_RS01705
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1 at 383.830 kb on + strand at 383.868 kb on + strand at 383.868 kb on + strand at 384.234 kb on - strand, within ABZR88_RS01690 at 384.800 kb on - strand at 385.323 kb on - strand, within ABZR88_RS01695 at 385.802 kb on + strand at 385.891 kb on - strand at 385.891 kb on - strand at 386.005 kb on + strand at 386.319 kb on + strand, within ABZR88_RS01700 at 386.534 kb on + strand, within ABZR88_RS01700 at 386.552 kb on + strand, within ABZR88_RS01700 at 386.552 kb on + strand, within ABZR88_RS01700 at 386.696 kb on + strand at 386.726 kb on + strand at 386.774 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 383,830 + -0.3 383,868 + +0.8 383,868 + -0.9 384,234 - ABZR88_RS01690 0.40 +0.8 384,800 - +0.7 385,323 - ABZR88_RS01695 0.51 +0.8 385,802 + -0.5 385,891 - +0.2 385,891 - -0.4 386,005 + +0.2 386,319 + ABZR88_RS01700 0.39 +0.5 386,534 + ABZR88_RS01700 0.78 -1.2 386,552 + ABZR88_RS01700 0.81 -2.7 386,552 + ABZR88_RS01700 0.81 -1.0 386,696 + -0.9 386,726 + +0.4 386,774 + +0.3
Or see this region's nucleotide sequence