Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS01690

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS01680 and ABZR88_RS01685 overlap by 1 nucleotidesABZR88_RS01685 and ABZR88_RS01690 are separated by 46 nucleotidesABZR88_RS01690 and ABZR88_RS01695 are separated by 91 nucleotides ABZR88_RS01680: ABZR88_RS01680 - M23 family metallopeptidase, at 381,673 to 383,385 _RS01680 ABZR88_RS01685: ABZR88_RS01685 - thioredoxin-dependent thiol peroxidase, at 383,385 to 383,846 _RS01685 ABZR88_RS01690: ABZR88_RS01690 - transketolase, at 383,893 to 384,738 _RS01690 ABZR88_RS01695: ABZR88_RS01695 - transketolase family protein, at 384,830 to 385,789 _RS01695 Position (kb) 383 384 385Strain fitness (log2 ratio) -1 0 1 2at 382.941 kb on - strand, within ABZR88_RS01680at 383.276 kb on + strandat 383.353 kb on - strandat 383.363 kb on - strandat 383.564 kb on - strand, within ABZR88_RS01685at 383.638 kb on - strand, within ABZR88_RS01685at 383.830 kb on + strandat 383.868 kb on + strandat 383.868 kb on + strandat 384.234 kb on - strand, within ABZR88_RS01690at 384.800 kb on - strandat 385.323 kb on - strand, within ABZR88_RS01695

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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382,941 - ABZR88_RS01680 0.74 +2.0
383,276 + -1.4
383,353 - +0.1
383,363 - -0.3
383,564 - ABZR88_RS01685 0.39 -0.6
383,638 - ABZR88_RS01685 0.55 -0.8
383,830 + -0.3
383,868 + +0.8
383,868 + -0.9
384,234 - ABZR88_RS01690 0.40 +0.8
384,800 - +0.7
385,323 - ABZR88_RS01695 0.51 +0.8

Or see this region's nucleotide sequence