Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01515 and ABZR88_RS01520 are separated by 235 nucleotides ABZR88_RS01520 and ABZR88_RS01525 are separated by 22 nucleotides
ABZR88_RS01515: ABZR88_RS01515 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 345,888 to 346,895
_RS01515
ABZR88_RS01520: ABZR88_RS01520 - efflux RND transporter periplasmic adaptor subunit, at 347,131 to 348,474
_RS01520
ABZR88_RS01525: ABZR88_RS01525 - TolC family protein, at 348,497 to 349,867
_RS01525
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.732 kb on + strand, within ABZR88_RS01515 at 346.890 kb on - strand at 346.964 kb on + strand at 347.008 kb on + strand at 347.120 kb on - strand at 347.266 kb on + strand, within ABZR88_RS01520 at 347.266 kb on + strand, within ABZR88_RS01520 at 347.267 kb on - strand, within ABZR88_RS01520 at 347.269 kb on - strand, within ABZR88_RS01520 at 347.270 kb on + strand, within ABZR88_RS01520 at 347.271 kb on - strand, within ABZR88_RS01520 at 347.292 kb on + strand, within ABZR88_RS01520 at 347.296 kb on + strand, within ABZR88_RS01520 at 347.776 kb on + strand, within ABZR88_RS01520 at 347.874 kb on - strand, within ABZR88_RS01520 at 347.895 kb on + strand, within ABZR88_RS01520 at 347.896 kb on - strand, within ABZR88_RS01520 at 348.152 kb on + strand, within ABZR88_RS01520 at 348.152 kb on + strand, within ABZR88_RS01520 at 348.153 kb on - strand, within ABZR88_RS01520 at 348.336 kb on + strand, within ABZR88_RS01520 at 348.453 kb on + strand at 348.593 kb on - strand at 348.613 kb on + strand at 348.861 kb on - strand, within ABZR88_RS01525 at 348.969 kb on + strand, within ABZR88_RS01525 at 348.970 kb on - strand, within ABZR88_RS01525 at 349.151 kb on + strand, within ABZR88_RS01525 at 349.174 kb on + strand, within ABZR88_RS01525 at 349.321 kb on + strand, within ABZR88_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 346,732 + ABZR88_RS01515 0.84 +1.1 346,890 - +0.1 346,964 + +0.4 347,008 + +0.4 347,120 - +0.1 347,266 + ABZR88_RS01520 0.10 +1.7 347,266 + ABZR88_RS01520 0.10 +1.3 347,267 - ABZR88_RS01520 0.10 +0.6 347,269 - ABZR88_RS01520 0.10 +2.7 347,270 + ABZR88_RS01520 0.10 +1.4 347,271 - ABZR88_RS01520 0.10 +2.1 347,292 + ABZR88_RS01520 0.12 +2.7 347,296 + ABZR88_RS01520 0.12 +0.2 347,776 + ABZR88_RS01520 0.48 +0.9 347,874 - ABZR88_RS01520 0.55 +1.0 347,895 + ABZR88_RS01520 0.57 +1.5 347,896 - ABZR88_RS01520 0.57 +2.1 348,152 + ABZR88_RS01520 0.76 +0.3 348,152 + ABZR88_RS01520 0.76 +0.7 348,153 - ABZR88_RS01520 0.76 +1.6 348,336 + ABZR88_RS01520 0.90 +0.6 348,453 + +0.3 348,593 - +1.8 348,613 + -0.2 348,861 - ABZR88_RS01525 0.27 +1.3 348,969 + ABZR88_RS01525 0.34 +0.2 348,970 - ABZR88_RS01525 0.35 +2.6 349,151 + ABZR88_RS01525 0.48 -0.8 349,174 + ABZR88_RS01525 0.49 +0.8 349,321 + ABZR88_RS01525 0.60 -2.4
Or see this region's nucleotide sequence