Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS01245

Experiment: polygalacturonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS01240 and ABZR88_RS01245 are separated by 656 nucleotidesABZR88_RS01245 and ABZR88_RS01250 are separated by 102 nucleotides ABZR88_RS01240: ABZR88_RS01240 - vitamin B12-dependent ribonucleotide reductase, at 287,105 to 290,422 _RS01240 ABZR88_RS01245: ABZR88_RS01245 - NUDIX hydrolase, at 291,079 to 291,639 _RS01245 ABZR88_RS01250: ABZR88_RS01250 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 291,742 to 292,476 _RS01250 Position (kb) 291 292Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 290.483 kb on + strandat 290.563 kb on - strandat 291.252 kb on + strand, within ABZR88_RS01245at 291.369 kb on - strand, within ABZR88_RS01245at 291.557 kb on + strand, within ABZR88_RS01245at 291.769 kb on - strandat 291.822 kb on - strand, within ABZR88_RS01250at 291.905 kb on - strand, within ABZR88_RS01250at 291.998 kb on - strand, within ABZR88_RS01250at 292.189 kb on - strand, within ABZR88_RS01250at 292.276 kb on - strand, within ABZR88_RS01250at 292.368 kb on + strand, within ABZR88_RS01250at 292.375 kb on - strand, within ABZR88_RS01250at 292.608 kb on + strandat 292.608 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic (C)
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290,483 + -0.8
290,563 - +0.2
291,252 + ABZR88_RS01245 0.31 +1.0
291,369 - ABZR88_RS01245 0.52 +0.6
291,557 + ABZR88_RS01245 0.85 +0.3
291,769 - +4.9
291,822 - ABZR88_RS01250 0.11 +5.5
291,905 - ABZR88_RS01250 0.22 +6.0
291,998 - ABZR88_RS01250 0.35 +5.7
292,189 - ABZR88_RS01250 0.61 +6.2
292,276 - ABZR88_RS01250 0.73 +6.5
292,368 + ABZR88_RS01250 0.85 +5.8
292,375 - ABZR88_RS01250 0.86 +5.7
292,608 + -1.2
292,608 + -0.7

Or see this region's nucleotide sequence