Experiment: polygalacturonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00280 and ABZR88_RS00285 are separated by 22 nucleotides ABZR88_RS00285 and ABZR88_RS00290 are separated by 73 nucleotides ABZR88_RS00290 and ABZR88_RS00295 are separated by 325 nucleotides
ABZR88_RS00280: ABZR88_RS00280 - Gfo/Idh/MocA family oxidoreductase, at 51,657 to 52,673
_RS00280
ABZR88_RS00285: ABZR88_RS00285 - redoxin domain-containing protein, at 52,696 to 53,214
_RS00285
ABZR88_RS00290: ABZR88_RS00290 - mannonate dehydratase, at 53,288 to 54,475
_RS00290
ABZR88_RS00295: ABZR88_RS00295 - hypothetical protein, at 54,801 to 56,294
_RS00295
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 52.465 kb on - strand, within ABZR88_RS00280 at 52.480 kb on + strand, within ABZR88_RS00280 at 52.505 kb on - strand, within ABZR88_RS00280 at 52.572 kb on - strand at 52.598 kb on + strand at 52.671 kb on + strand at 52.671 kb on + strand at 52.693 kb on + strand at 52.924 kb on + strand, within ABZR88_RS00285 at 53.074 kb on + strand, within ABZR88_RS00285 at 53.099 kb on - strand, within ABZR88_RS00285 at 53.188 kb on - strand at 53.211 kb on - strand at 53.230 kb on + strand at 53.353 kb on + strand at 53.455 kb on + strand, within ABZR88_RS00290 at 53.478 kb on + strand, within ABZR88_RS00290 at 53.586 kb on - strand, within ABZR88_RS00290 at 53.702 kb on - strand, within ABZR88_RS00290 at 53.798 kb on + strand, within ABZR88_RS00290 at 53.805 kb on + strand, within ABZR88_RS00290 at 53.847 kb on + strand, within ABZR88_RS00290 at 53.939 kb on - strand, within ABZR88_RS00290 at 54.134 kb on - strand, within ABZR88_RS00290 at 54.139 kb on + strand, within ABZR88_RS00290 at 54.140 kb on - strand, within ABZR88_RS00290 at 54.461 kb on - strand at 54.470 kb on - strand at 54.577 kb on - strand at 54.598 kb on - strand at 54.615 kb on - strand at 54.950 kb on + strand at 54.951 kb on - strand, within ABZR88_RS00295 at 55.089 kb on - strand, within ABZR88_RS00295 at 55.126 kb on - strand, within ABZR88_RS00295 at 55.126 kb on - strand, within ABZR88_RS00295 at 55.174 kb on - strand, within ABZR88_RS00295 at 55.446 kb on + strand, within ABZR88_RS00295
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic (C) remove 52,465 - ABZR88_RS00280 0.79 -2.4 52,480 + ABZR88_RS00280 0.81 +0.9 52,505 - ABZR88_RS00280 0.83 -0.3 52,572 - -2.7 52,598 + +1.0 52,671 + +0.7 52,671 + +1.2 52,693 + +1.7 52,924 + ABZR88_RS00285 0.44 -2.4 53,074 + ABZR88_RS00285 0.73 -0.0 53,099 - ABZR88_RS00285 0.78 -1.3 53,188 - +0.9 53,211 - -1.4 53,230 + +4.1 53,353 + +1.7 53,455 + ABZR88_RS00290 0.14 -0.3 53,478 + ABZR88_RS00290 0.16 -1.5 53,586 - ABZR88_RS00290 0.25 -0.3 53,702 - ABZR88_RS00290 0.35 -0.9 53,798 + ABZR88_RS00290 0.43 +0.2 53,805 + ABZR88_RS00290 0.44 -1.6 53,847 + ABZR88_RS00290 0.47 +1.1 53,939 - ABZR88_RS00290 0.55 -1.1 54,134 - ABZR88_RS00290 0.71 -0.2 54,139 + ABZR88_RS00290 0.72 -0.6 54,140 - ABZR88_RS00290 0.72 -1.3 54,461 - -1.5 54,470 - -1.3 54,577 - -0.3 54,598 - -2.0 54,615 - -1.0 54,950 + -1.4 54,951 - ABZR88_RS00295 0.10 +0.4 55,089 - ABZR88_RS00295 0.19 +1.7 55,126 - ABZR88_RS00295 0.22 -1.2 55,126 - ABZR88_RS00295 0.22 -0.0 55,174 - ABZR88_RS00295 0.25 -0.5 55,446 + ABZR88_RS00295 0.43 -1.4
Or see this region's nucleotide sequence