Experiment: D-Cellobiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12220 and ABZR88_RS12225 are separated by 160 nucleotides ABZR88_RS12225 and ABZR88_RS12230 are separated by 42 nucleotides ABZR88_RS12230 and ABZR88_RS12235 are separated by 19 nucleotides ABZR88_RS12235 and ABZR88_RS12240 are separated by 102 nucleotides
ABZR88_RS12220: ABZR88_RS12220 - hypothetical protein, at 3,005,733 to 3,008,342
_RS12220
ABZR88_RS12225: ABZR88_RS12225 - ABC transporter ATP-binding protein, at 3,008,503 to 3,010,329
_RS12225
ABZR88_RS12230: ABZR88_RS12230 - hypothetical protein, at 3,010,372 to 3,010,626
_RS12230
ABZR88_RS12235: ABZR88_RS12235 - Crp/Fnr family transcriptional regulator, at 3,010,646 to 3,011,215
_RS12235
ABZR88_RS12240: ABZR88_RS12240 - SDR family NAD(P)-dependent oxidoreductase, at 3,011,318 to 3,012,055
_RS12240
Position (kb)
3008
3009
3010
3011 Strain fitness (log2 ratio)
-2
-1
0
1 at 3007.595 kb on - strand, within ABZR88_RS12220 at 3007.800 kb on - strand, within ABZR88_RS12220 at 3007.800 kb on - strand, within ABZR88_RS12220 at 3007.986 kb on + strand, within ABZR88_RS12220 at 3008.030 kb on - strand, within ABZR88_RS12220 at 3008.108 kb on - strand at 3008.209 kb on + strand at 3008.661 kb on - strand at 3008.663 kb on + strand at 3008.793 kb on - strand, within ABZR88_RS12225 at 3008.806 kb on - strand, within ABZR88_RS12225 at 3008.855 kb on + strand, within ABZR88_RS12225 at 3008.855 kb on + strand, within ABZR88_RS12225 at 3008.860 kb on - strand, within ABZR88_RS12225 at 3008.862 kb on + strand, within ABZR88_RS12225 at 3008.882 kb on + strand, within ABZR88_RS12225 at 3009.004 kb on - strand, within ABZR88_RS12225 at 3009.027 kb on - strand, within ABZR88_RS12225 at 3009.072 kb on - strand, within ABZR88_RS12225 at 3009.343 kb on + strand, within ABZR88_RS12225 at 3009.493 kb on + strand, within ABZR88_RS12225 at 3009.589 kb on - strand, within ABZR88_RS12225 at 3009.740 kb on - strand, within ABZR88_RS12225 at 3009.776 kb on - strand, within ABZR88_RS12225 at 3010.057 kb on + strand, within ABZR88_RS12225 at 3010.057 kb on + strand, within ABZR88_RS12225 at 3010.096 kb on - strand, within ABZR88_RS12225 at 3010.152 kb on - strand at 3010.172 kb on + strand at 3010.172 kb on + strand at 3010.173 kb on - strand at 3010.177 kb on - strand at 3010.328 kb on - strand at 3010.393 kb on + strand at 3010.508 kb on - strand, within ABZR88_RS12230 at 3010.559 kb on - strand, within ABZR88_RS12230 at 3010.609 kb on - strand at 3010.639 kb on - strand at 3010.660 kb on + strand at 3010.713 kb on + strand, within ABZR88_RS12235 at 3010.850 kb on - strand, within ABZR88_RS12235 at 3011.047 kb on + strand, within ABZR88_RS12235 at 3011.047 kb on + strand, within ABZR88_RS12235 at 3011.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C); 6 days remove 3,007,595 - ABZR88_RS12220 0.71 -0.3 3,007,800 - ABZR88_RS12220 0.79 -0.1 3,007,800 - ABZR88_RS12220 0.79 +0.1 3,007,986 + ABZR88_RS12220 0.86 -0.4 3,008,030 - ABZR88_RS12220 0.88 -0.5 3,008,108 - -0.2 3,008,209 + +0.5 3,008,661 - -0.1 3,008,663 + -0.3 3,008,793 - ABZR88_RS12225 0.16 -0.3 3,008,806 - ABZR88_RS12225 0.17 -0.9 3,008,855 + ABZR88_RS12225 0.19 -0.2 3,008,855 + ABZR88_RS12225 0.19 -0.4 3,008,860 - ABZR88_RS12225 0.20 -1.5 3,008,862 + ABZR88_RS12225 0.20 -0.3 3,008,882 + ABZR88_RS12225 0.21 -0.9 3,009,004 - ABZR88_RS12225 0.27 +0.4 3,009,027 - ABZR88_RS12225 0.29 +0.2 3,009,072 - ABZR88_RS12225 0.31 -0.2 3,009,343 + ABZR88_RS12225 0.46 +0.2 3,009,493 + ABZR88_RS12225 0.54 -2.1 3,009,589 - ABZR88_RS12225 0.59 -0.3 3,009,740 - ABZR88_RS12225 0.68 +0.2 3,009,776 - ABZR88_RS12225 0.70 -1.7 3,010,057 + ABZR88_RS12225 0.85 -0.3 3,010,057 + ABZR88_RS12225 0.85 +0.3 3,010,096 - ABZR88_RS12225 0.87 +0.2 3,010,152 - -0.0 3,010,172 + -0.1 3,010,172 + -0.7 3,010,173 - -0.4 3,010,177 - +0.0 3,010,328 - -0.5 3,010,393 + +0.1 3,010,508 - ABZR88_RS12230 0.53 -0.5 3,010,559 - ABZR88_RS12230 0.73 +0.4 3,010,609 - -0.0 3,010,639 - +1.1 3,010,660 + -0.1 3,010,713 + ABZR88_RS12235 0.12 +1.4 3,010,850 - ABZR88_RS12235 0.36 -0.6 3,011,047 + ABZR88_RS12235 0.70 +1.7 3,011,047 + ABZR88_RS12235 0.70 +0.6 3,011,251 + -1.1
Or see this region's nucleotide sequence