Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17485 and ABZR88_RS17490 overlap by 4 nucleotides ABZR88_RS17490 and ABZR88_RS17495 are separated by 127 nucleotides ABZR88_RS17495 and ABZR88_RS17500 are separated by 32 nucleotides
ABZR88_RS17485: ABZR88_RS17485 - glucose-1-phosphate thymidylyltransferase RfbA, at 4,278,091 to 4,278,951
_RS17485
ABZR88_RS17490: ABZR88_RS17490 - dTDP-4-dehydrorhamnose reductase, at 4,278,948 to 4,279,808
_RS17490
ABZR88_RS17495: ABZR88_RS17495 - DUF3467 domain-containing protein, at 4,279,936 to 4,280,247
_RS17495
ABZR88_RS17500: ABZR88_RS17500 - nucleotide sugar dehydrogenase, at 4,280,280 to 4,281,599
_RS17500
Position (kb)
4279
4280
4281 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4278.964 kb on - strand at 4278.968 kb on + strand at 4279.830 kb on - strand at 4280.042 kb on - strand, within ABZR88_RS17495 at 4280.331 kb on + strand at 4280.414 kb on - strand, within ABZR88_RS17500 at 4280.458 kb on + strand, within ABZR88_RS17500 at 4280.459 kb on - strand, within ABZR88_RS17500 at 4280.540 kb on + strand, within ABZR88_RS17500 at 4280.540 kb on + strand, within ABZR88_RS17500 at 4280.598 kb on + strand, within ABZR88_RS17500 at 4280.658 kb on - strand, within ABZR88_RS17500 at 4280.982 kb on - strand, within ABZR88_RS17500 at 4281.043 kb on - strand, within ABZR88_RS17500 at 4281.070 kb on - strand, within ABZR88_RS17500
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 4,278,964 - +0.9 4,278,968 + +0.3 4,279,830 - -1.5 4,280,042 - ABZR88_RS17495 0.34 -1.4 4,280,331 + -3.0 4,280,414 - ABZR88_RS17500 0.10 -1.5 4,280,458 + ABZR88_RS17500 0.13 +1.4 4,280,459 - ABZR88_RS17500 0.14 -0.7 4,280,540 + ABZR88_RS17500 0.20 +0.7 4,280,540 + ABZR88_RS17500 0.20 +0.2 4,280,598 + ABZR88_RS17500 0.24 +0.2 4,280,658 - ABZR88_RS17500 0.29 -0.8 4,280,982 - ABZR88_RS17500 0.53 -0.5 4,281,043 - ABZR88_RS17500 0.58 -0.5 4,281,070 - ABZR88_RS17500 0.60 +0.7
Or see this region's nucleotide sequence