Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17495

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17485 and ABZR88_RS17490 overlap by 4 nucleotidesABZR88_RS17490 and ABZR88_RS17495 are separated by 127 nucleotidesABZR88_RS17495 and ABZR88_RS17500 are separated by 32 nucleotides ABZR88_RS17485: ABZR88_RS17485 - glucose-1-phosphate thymidylyltransferase RfbA, at 4,278,091 to 4,278,951 _RS17485 ABZR88_RS17490: ABZR88_RS17490 - dTDP-4-dehydrorhamnose reductase, at 4,278,948 to 4,279,808 _RS17490 ABZR88_RS17495: ABZR88_RS17495 - DUF3467 domain-containing protein, at 4,279,936 to 4,280,247 _RS17495 ABZR88_RS17500: ABZR88_RS17500 - nucleotide sugar dehydrogenase, at 4,280,280 to 4,281,599 _RS17500 Position (kb) 4279 4280 4281Strain fitness (log2 ratio) -3 -2 -1 0 1at 4278.964 kb on - strandat 4278.968 kb on + strandat 4279.830 kb on - strandat 4280.042 kb on - strand, within ABZR88_RS17495at 4280.331 kb on + strandat 4280.414 kb on - strand, within ABZR88_RS17500at 4280.458 kb on + strand, within ABZR88_RS17500at 4280.459 kb on - strand, within ABZR88_RS17500at 4280.540 kb on + strand, within ABZR88_RS17500at 4280.540 kb on + strand, within ABZR88_RS17500at 4280.598 kb on + strand, within ABZR88_RS17500at 4280.658 kb on - strand, within ABZR88_RS17500at 4280.982 kb on - strand, within ABZR88_RS17500at 4281.043 kb on - strand, within ABZR88_RS17500at 4281.070 kb on - strand, within ABZR88_RS17500

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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4,278,964 - +0.9
4,278,968 + +0.3
4,279,830 - -1.5
4,280,042 - ABZR88_RS17495 0.34 -1.4
4,280,331 + -3.0
4,280,414 - ABZR88_RS17500 0.10 -1.5
4,280,458 + ABZR88_RS17500 0.13 +1.4
4,280,459 - ABZR88_RS17500 0.14 -0.7
4,280,540 + ABZR88_RS17500 0.20 +0.7
4,280,540 + ABZR88_RS17500 0.20 +0.2
4,280,598 + ABZR88_RS17500 0.24 +0.2
4,280,658 - ABZR88_RS17500 0.29 -0.8
4,280,982 - ABZR88_RS17500 0.53 -0.5
4,281,043 - ABZR88_RS17500 0.58 -0.5
4,281,070 - ABZR88_RS17500 0.60 +0.7

Or see this region's nucleotide sequence