Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15280

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15275 and ABZR88_RS15280 are separated by 56 nucleotidesABZR88_RS15280 and ABZR88_RS15285 are separated by 71 nucleotides ABZR88_RS15275: ABZR88_RS15275 - L-fucose:H+ symporter permease, at 3,782,155 to 3,783,456 _RS15275 ABZR88_RS15280: ABZR88_RS15280 - hypothetical protein, at 3,783,513 to 3,783,749 _RS15280 ABZR88_RS15285: ABZR88_RS15285 - DNA ligase D, at 3,783,821 to 3,786,544 _RS15285 Position (kb) 3783 3784Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3782.526 kb on + strand, within ABZR88_RS15275at 3782.667 kb on + strand, within ABZR88_RS15275at 3782.748 kb on - strand, within ABZR88_RS15275at 3782.807 kb on + strand, within ABZR88_RS15275at 3782.905 kb on - strand, within ABZR88_RS15275at 3783.036 kb on + strand, within ABZR88_RS15275at 3783.039 kb on - strand, within ABZR88_RS15275at 3783.039 kb on - strand, within ABZR88_RS15275at 3783.152 kb on + strand, within ABZR88_RS15275at 3783.153 kb on - strand, within ABZR88_RS15275at 3783.153 kb on - strand, within ABZR88_RS15275at 3783.153 kb on - strand, within ABZR88_RS15275at 3783.176 kb on - strand, within ABZR88_RS15275at 3783.337 kb on - strandat 3783.422 kb on + strandat 3783.423 kb on - strandat 3783.433 kb on - strandat 3783.433 kb on - strandat 3783.552 kb on + strand, within ABZR88_RS15280at 3783.591 kb on - strand, within ABZR88_RS15280at 3783.630 kb on + strand, within ABZR88_RS15280at 3783.898 kb on + strandat 3783.935 kb on - strandat 3783.935 kb on - strandat 3784.059 kb on - strandat 3784.064 kb on + strandat 3784.066 kb on + strandat 3784.191 kb on + strand, within ABZR88_RS15285at 3784.319 kb on + strand, within ABZR88_RS15285at 3784.408 kb on - strand, within ABZR88_RS15285at 3784.408 kb on - strand, within ABZR88_RS15285at 3784.706 kb on - strand, within ABZR88_RS15285

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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3,782,526 + ABZR88_RS15275 0.28 -0.6
3,782,667 + ABZR88_RS15275 0.39 -0.7
3,782,748 - ABZR88_RS15275 0.46 -0.4
3,782,807 + ABZR88_RS15275 0.50 -0.1
3,782,905 - ABZR88_RS15275 0.58 -0.7
3,783,036 + ABZR88_RS15275 0.68 -0.4
3,783,039 - ABZR88_RS15275 0.68 +1.7
3,783,039 - ABZR88_RS15275 0.68 +6.4
3,783,152 + ABZR88_RS15275 0.77 -1.9
3,783,153 - ABZR88_RS15275 0.77 +0.1
3,783,153 - ABZR88_RS15275 0.77 -0.4
3,783,153 - ABZR88_RS15275 0.77 +1.2
3,783,176 - ABZR88_RS15275 0.78 +2.5
3,783,337 - +0.4
3,783,422 + -0.6
3,783,423 - -0.0
3,783,433 - +0.2
3,783,433 - +0.1
3,783,552 + ABZR88_RS15280 0.16 -0.6
3,783,591 - ABZR88_RS15280 0.33 -0.6
3,783,630 + ABZR88_RS15280 0.49 +0.5
3,783,898 + +0.1
3,783,935 - +0.0
3,783,935 - +0.0
3,784,059 - -0.8
3,784,064 + -0.9
3,784,066 + +0.1
3,784,191 + ABZR88_RS15285 0.14 -1.1
3,784,319 + ABZR88_RS15285 0.18 -1.2
3,784,408 - ABZR88_RS15285 0.22 +0.3
3,784,408 - ABZR88_RS15285 0.22 +0.7
3,784,706 - ABZR88_RS15285 0.32 +1.5

Or see this region's nucleotide sequence