Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14575

Experiment: Melibiose (C); 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14570 and ABZR88_RS14575 are separated by 159 nucleotidesABZR88_RS14575 and ABZR88_RS14580 are separated by 141 nucleotidesABZR88_RS14580 and ABZR88_RS14585 are separated by 11 nucleotides ABZR88_RS14570: ABZR88_RS14570 - RNA polymerase factor sigma-54, at 3,606,631 to 3,608,106 _RS14570 ABZR88_RS14575: ABZR88_RS14575 - large-conductance mechanosensitive channel protein MscL, at 3,608,266 to 3,608,667 _RS14575 ABZR88_RS14580: ABZR88_RS14580 - DUF4249 domain-containing protein, at 3,608,809 to 3,609,597 _RS14580 ABZR88_RS14585: ABZR88_RS14585 - TonB-dependent receptor, at 3,609,609 to 3,611,978 _RS14585 Position (kb) 3608 3609Strain fitness (log2 ratio) -1 0 1at 3608.130 kb on - strandat 3608.375 kb on + strand, within ABZR88_RS14575at 3608.385 kb on - strand, within ABZR88_RS14575at 3608.560 kb on - strand, within ABZR88_RS14575at 3608.720 kb on + strandat 3608.759 kb on + strandat 3608.763 kb on - strandat 3608.765 kb on + strandat 3608.811 kb on - strandat 3609.043 kb on + strand, within ABZR88_RS14580at 3609.044 kb on - strand, within ABZR88_RS14580at 3609.116 kb on - strand, within ABZR88_RS14580at 3609.226 kb on + strand, within ABZR88_RS14580at 3609.231 kb on + strand, within ABZR88_RS14580at 3609.413 kb on - strand, within ABZR88_RS14580at 3609.569 kb on - strandat 3609.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Melibiose (C); 6 days
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3,608,130 - -0.4
3,608,375 + ABZR88_RS14575 0.27 -0.8
3,608,385 - ABZR88_RS14575 0.30 +0.3
3,608,560 - ABZR88_RS14575 0.73 -1.5
3,608,720 + +0.3
3,608,759 + +0.2
3,608,763 - -0.0
3,608,765 + -0.2
3,608,811 - -1.3
3,609,043 + ABZR88_RS14580 0.30 -0.4
3,609,044 - ABZR88_RS14580 0.30 +0.8
3,609,116 - ABZR88_RS14580 0.39 -0.5
3,609,226 + ABZR88_RS14580 0.53 +0.2
3,609,231 + ABZR88_RS14580 0.53 -0.5
3,609,413 - ABZR88_RS14580 0.77 -0.5
3,609,569 - +0.3
3,609,569 - +0.2

Or see this region's nucleotide sequence