Experiment: Melibiose (C); 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14570 and ABZR88_RS14575 are separated by 159 nucleotides ABZR88_RS14575 and ABZR88_RS14580 are separated by 141 nucleotides ABZR88_RS14580 and ABZR88_RS14585 are separated by 11 nucleotides
ABZR88_RS14570: ABZR88_RS14570 - RNA polymerase factor sigma-54, at 3,606,631 to 3,608,106
_RS14570
ABZR88_RS14575: ABZR88_RS14575 - large-conductance mechanosensitive channel protein MscL, at 3,608,266 to 3,608,667
_RS14575
ABZR88_RS14580: ABZR88_RS14580 - DUF4249 domain-containing protein, at 3,608,809 to 3,609,597
_RS14580
ABZR88_RS14585: ABZR88_RS14585 - TonB-dependent receptor, at 3,609,609 to 3,611,978
_RS14585
Position (kb)
3608
3609 Strain fitness (log2 ratio)
-1
0
1 at 3608.130 kb on - strand at 3608.375 kb on + strand, within ABZR88_RS14575 at 3608.385 kb on - strand, within ABZR88_RS14575 at 3608.560 kb on - strand, within ABZR88_RS14575 at 3608.720 kb on + strand at 3608.759 kb on + strand at 3608.763 kb on - strand at 3608.765 kb on + strand at 3608.811 kb on - strand at 3609.043 kb on + strand, within ABZR88_RS14580 at 3609.044 kb on - strand, within ABZR88_RS14580 at 3609.116 kb on - strand, within ABZR88_RS14580 at 3609.226 kb on + strand, within ABZR88_RS14580 at 3609.231 kb on + strand, within ABZR88_RS14580 at 3609.413 kb on - strand, within ABZR88_RS14580 at 3609.569 kb on - strand at 3609.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Melibiose (C); 6 days remove 3,608,130 - -0.4 3,608,375 + ABZR88_RS14575 0.27 -0.8 3,608,385 - ABZR88_RS14575 0.30 +0.3 3,608,560 - ABZR88_RS14575 0.73 -1.5 3,608,720 + +0.3 3,608,759 + +0.2 3,608,763 - -0.0 3,608,765 + -0.2 3,608,811 - -1.3 3,609,043 + ABZR88_RS14580 0.30 -0.4 3,609,044 - ABZR88_RS14580 0.30 +0.8 3,609,116 - ABZR88_RS14580 0.39 -0.5 3,609,226 + ABZR88_RS14580 0.53 +0.2 3,609,231 + ABZR88_RS14580 0.53 -0.5 3,609,413 - ABZR88_RS14580 0.77 -0.5 3,609,569 - +0.3 3,609,569 - +0.2
Or see this region's nucleotide sequence